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[176421_at]

Description Y40A1A.1 /REP_DB=WormBase Gene ID /WP=CE24251 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 15      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 5.6
(0.6)
A 		3.3
(-3)
A 		7.1
(3)
A 		5.6
(0.6)
A 		4
B 3.4
(-0.2)
A 		4.4
(3)
A 		3.9
(1.4)
A 		2.5
(-3)
A 		2
C 9.6
(3)
A 		3.2
(-2.8)
A 		3
(-3)
A 		9
(2.5)
A 		7
avr 6.2
(3) 		3.6
(-3) 		4.7
(-0.5) 		5.7
(1.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 6.7
(-0.1)
A 		7.2
(0.7)
A 		8.7
(2.9)
A 		8.8
(3)
A 		4.7
(-3)
A 		5.2
(-2.3)
A 		4
B 2.7
(-2.7)
A 		2.6
(-3)
A 		4.3
(2.4)
A 		4.5
(3)
A 		3.2
(-1.1)
A 		3.5
(-0.2)
A 		2
C 3.5
(-2.3)
A 		9.8
(0.7)
A 		5.1
(-1.5)
A 		14.6
(3)
A 		2
(-3)
A 		3
(-2.5)
A 		13
avr 4.3
(-2) 		6.5
(0.2) 		6
(-0.3) 		9.3
(3) 		3.3
(-3) 		3.9
(-2.4) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 2
(3)
A 		0.7
(-3)
A 		1.9
(2.5)
A 		0.8
(-2.5)
A 		1
B 1.1
(3)
A 		1.1
(3)
A 		0.9
(1)
A 		0.5
(-3)
A 		1
C 3.2
(3)
A 		0.9
(-3)
A 		1.1
(-2.5)
A 		1.5
(-1.4)
A 		2
avr 2.1
(3) 		0.9
(-3) 		1.3
(-1) 		0.9
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.2
(-3)
A 		2.5
(3)
A 		1.9
(0.2)
A 		2.2
(1.6)
A 		1.4
(-2.1)
A 		1.3
(-2.5)
A 		1
B 0.9
(-3)
A 		0.9
(-3)
A 		1
(-1.5)
A 		1.2
(1.5)
A 		1.3
(3)
A 		1.3
(3)
A 		0
C 1.3
(-1.4)
A 		3
(3)
A 		1.3
(-1.4)
A 		2.9
(2.7)
A 		0.7
(-3)
A 		1
(-2.2)
A 		2
avr 1.1
(-3) 		2.1
(3) 		1.4
(-1.2) 		2.1
(3) 		1.1
(-3) 		1.2
(-2.4) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176421_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18381
Sequence Type Exemplar sequence
Representative Public ID Y40A1A.1 NCBI
Target Description Y40A1A.1 /REP_DB=WormBase Gene ID /WP=CE24251 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029789(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029789 NCBI Caenorhabditis elegans Y40A1A.1 (Y40A1A.1) mRNA, complete cds. 10/11 None
Y40A1A.1 ENSEMBL cdna:known chromosome:CEL140:X:2000940:2002483:1 gene:Y40A1A.1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043287 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2000939-2002625(+) 97.28 100.0
Public Domain and Genome References
Gene Title
Ensembl Y40A1A.1
Entrez Gene 189776 Entrez gene
SwissProt Q8IU10 EMBL-EBI
WormBase CE33734 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAN73854 Hypothetical protein Y40A1A.1 [Caenorhabditis elegans] ref|NP_001024960.1| Y40A1A.1 [Caenorhabditis elegans] 1.0E-162
blast AAB09102 Hypothetical protein F22H10.5 [Caenorhabditis elegans] ref|NP_510696.1| F22H10.5 [Caenorhabditis elegans] 3.0E-86
blast CAA95786 Hypothetical protein C01H6.9 [Caenorhabditis elegans] emb|CAA95847.1| Hypothetical protein C01H6.9 [Caenorhabditis elegans] emb|CAB10931.1| Hypothetical protein C01H6.9 [Caenorhabditis elegans] ref|NP_492043.1| C01H6.9 [Caenorhabditis elegans] 6.0E-45
Sequence
Target Sequence 
>C. ELEGANS:176421_AT
aaattgctgtctgcgttgagtactaaaaaccgccctaacgtcacggaaaactttgtgaaa
ttggttatgacaaaggttgttgttggaaagtacccaacatcattattgaaagcttgggac
aagtttcgagtggaagaacaatctgggaacatccgtccgtcaaaattcaagaaaaatcaa
ttatacctgcttttgattatgtcaaacggtggaactcctctcgaaaagttcgaaatggac
aatattggtcaattctgctcaattattcaacaacttctcttctctctagcaattgccgaa
aaggaaatgcagtttgaacatcgtgacctccacctcggcaatgttcttataaaaaaacag
gtgtgggagagcactcaaatcatttacgaggacatggagaaagacggagcaatgtttgaa
gggttcggcgactcgcaattcgatgtctatcgagagatgagaagcaactgcaagagaaat
tggcaattgttttcaagtaaatcgaacatcatgtggatcaagtttatcgccaccacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTGCTGTCTGCGTTGAGTACTA 654 115 397 Antisense
AACAATCTGGGAACATCCGTCCGTC 409 133 533 Antisense
GTGGAACTCCTCTCGAAAAGTTCGA 649 489 605 Antisense
GGTCAATTCTGCTCAATTATTCAAC 703 503 643 Antisense
AATTATTCAACAACTTCTCTTCTCT 690 175 657 Antisense
CTCTTCTCTCTAGCAATTGCCGAAA 348 229 673 Antisense
TGCAGTTTGAACATCGTGACCTCCA 163 577 704 Antisense
TCCACCTCGGCAATGTTCTTATAAA 341 589 725 Antisense
GGGAGAGCACTCAAATCATTTACGA 424 495 761 Antisense
GAAGGGTTCGGCGACTCGCAATTCG 243 335 814 Antisense
GTGGATCAAGTTTATCGCCACCACC 363 489 909 Antisense
Sequence Source Affymetrix Proprietary Database