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[176420_at]

Description Y105E8B.CC /REP_DB=WormBase Gene ID /WP=CE24104 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster 6grp_total > 10      4grp_total > 29      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 161
(3)
A 		88.6
(-2.7)
A 		85
(-3)
A 		131.9
(0.7)
A 		76
B 168.2
(3)
P 		127.7
(-0.1)
A 		88.8
(-3)
A 		141.4
(1)
A 		79
C 167
(2.5)
A 		139.3
(0.9)
A 		74.7
(-3)
A 		174.6
(3)
A 		100
avr 165.4
(3) 		118.5
(-0.4) 		82.8
(-3) 		149.3
(1.8) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 53
(-3)
A 		96
(2.7)
A 		98.2
(3)
A 		58.3
(-2.3)
A 		64.7
(-1.4)
A 		60
(-2.1)
A 		45
B 56.5
(-3)
A 		81.4
(-0.5)
A 		117.1
(3)
A 		88.2
(0.1)
A 		57.9
(-2.9)
A 		101.1
(1.4)
A 		61
C 65.7
(-0.2)
A 		98.3
(3)
A 		37.5
(-3)
A 		49.9
(-1.8)
A 		49.4
(-1.8)
A 		68.4
(0)
A 		61
avr 58.4
(-2.8) 		91.9
(3) 		84.3
(1.7) 		65.5
(-1.6) 		57.3
(-3) 		76.5
(0.3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 58.6
(3)
A 		19.2
(-3)
A 		22.2
(-2.5)
A 		19.3
(-3)
A 		39
B 53.6
(3)
P 		31.5
(-1)
A 		20.6
(-3)
A 		30.1
(-1.3)
A 		33
C 55.3
(3)
A 		40
(-0.1)
A 		26
(-3)
A 		29.4
(-2.3)
A 		29
avr 55.8
(3) 		30.2
(-1.7) 		22.9
(-3) 		26.3
(-2.4) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 9.8
(-3)
A 		34.1
(3)
A 		21.4
(-0.1)
A 		14.8
(-1.8)
A 		19.5
(-0.6)
A 		14.6
(-1.8)
A 		24
B 19.7
(-3)
A 		27.1
(-0.5)
A 		28.4
(-0.1)
A 		23.4
(-1.8)
A 		23.5
(-1.7)
A 		37.7
(3)
A 		18
C 24.4
(1.4)
A 		30
(3)
A 		9.5
(-3)
A 		10
(-2.9)
A 		16
(-1.1)
A 		22.9
(0.9)
A 		21
avr 18
(-2.2) 		30.4
(3) 		19.8
(-1.4) 		16.1
(-3) 		19.7
(-1.5) 		25.1
(0.8) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176420_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18830
Sequence Type Exemplar sequence
Representative Public ID Y105E8B.CC NCBI
Target Description Y105E8B.CC /REP_DB=WormBase Gene ID /WP=CE24104 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026518(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026518 NCBI Caenorhabditis elegans Y105E8A.29 (Y105E8A.29) mRNA, complete cds. 11/11 None
GENEFINDER00000013513 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14593530:14598930:-1 11/11 None
Y105E8A.29 ENSEMBL cdna:known chromosome:CEL140:I:14593530:14608407:-1 gene:Y105E8A.29 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013363 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14593460-14598861(-) 96.36 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105E8A.29
Entrez Gene 3565958 Entrez gene
SwissProt Q7YTJ0 EMBL-EBI
WormBase CE35056 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE17987 Hypothetical protein Y105E8A.29 [Caenorhabditis elegans] ref|NP_001021689.1| Y105E8A.29 [Caenorhabditis elegans] 1.0E-145
blast CAE17987 Hypothetical protein Y105E8A.29 [Caenorhabditis elegans] ref|NP_001021689.1| Y105E8A.29 [Caenorhabditis elegans] 1.0E-137
blast CAE72601 Hypothetical protein CBG19791 [Caenorhabditis briggsae] 4.0E-55
blast CAE72601 Hypothetical protein CBG19791 [Caenorhabditis briggsae] 7.0E-27
Sequence
Target Sequence 
>C. ELEGANS:176420_AT
gatgtgtacttctatgttgcttgacactgtgttcacaactgctacttcttcttcttctta
ttcttcttcttctgaggatgacgcatatgtgccctcggtagctgcagcggcttctgctgc
tgcagcagcacagtcaccatcaccgtctatgtcgttgtcaattggaaaaaacgcgaaaaa
agaaaaatccggttccgacacattcacgtttggtaatctattccgcaagaagccaccaac
aagtcgtccaaatctagctgacatcatatcggatctggatcaaagatcaacgacaggggg
ccgtggtggtggatcattgtcggctggagccactaatcgacgcagtacatctgctacaat
tcttccgatgagttctgctggtggatgcgacccgacgactccatttgattctgcgtgctc
acttgacggtaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTGTACTTCTATGTTGCTTGAC 305 409 849 Antisense
GAGGATGACGCATATGTGCCCTCGG 560 403 922 Antisense
CATCACCGTCTATGTCGTTGTCAAT 464 213 986 Antisense
GTTCCGACACATTCACGTTTGGTAA 548 441 1040 Antisense
CAACGACAGGGGGCCGTGGTGGTGG 646 187 1136 Antisense
GGTGGATCATTGTCGGCTGGAGCCA 494 499 1156 Antisense
GAGCCACTAATCGACGCAGTACATC 461 385 1175 Antisense
GTACATCTGCTACAATTCTTCCGAT 473 459 1193 Antisense
TGAGTTCTGCTGGTGGATGCGACCC 90 569 1217 Antisense
GACGACTCCATTTGATTCTGCGTGC 517 379 1242 Antisense
TTCTGCGTGCTCACTTGACGGTAAG 676 677 1257 Antisense
Sequence Source Affymetrix Proprietary Database