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[176419_at]

Description Y71G12B.B /REP_DB=WormBase Gene ID /WP=CE22913 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 87      4grp_total > 51      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 4.8
(-3)
A 		26
(1.7)
A 		30.1
(2.7)
A 		31.6
(3)
A 		27
B 43.8
(3)
A 		38.7
(2.2)
A 		32.3
(1.2)
A 		4.6
(-3)
A 		39
C 18.4
(-0.2)
A 		34.4
(3)
A 		4.3
(-3)
A 		4.5
(-3)
A 		30
avr 22.3
(-0.3) 		33
(3) 		22.2
(-0.3) 		13.6
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 314
1 2 3 4 5 6 range
A 2.6
(-3)
A 		1.5
(-3)
A 		29.8
(-2.5)
A 		38.3
(-2.3)
A 		186.2
(0.5)
P 		315.9
(3)
P 		314
B 43.9
(-2.1)
A 		5.1
(-3)
A 		36
(-2.2)
A 		40.9
(-2.1)
A 		117.5
(-0.3)
P 		251.2
(3)
P 		246
C 8.9
(-2.9)
A 		4.1
(-3)
A 		44.3
(-2)
A 		74.3
(-1.3)
A 		144.6
(0.4)
P 		255.1
(3)
P 		251
avr 18.5
(-2.7) 		3.6
(-3) 		36.7
(-2.3) 		51.2
(-1.9) 		149.4
(0.2) 		274.1
(3) 		271
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.8
(-3)
A 		5.6
(0.7)
A 		7.9
(3)
A 		4.6
(-0.2)
A 		6
B 14
(3)
A 		9.6
(1)
A 		7.5
(0)
A 		1
(-3)
A 		13
C 6.1
(0.5)
A 		9.9
(3)
A 		1.5
(-2.5)
A 		0.8
(-3)
A 		9
avr 7.3
(2) 		8.4
(3) 		5.6
(0.3) 		2.1
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 0.5
(-3)
A 		0.5
(-3)
A 		6.5
(-2.5)
A 		9.7
(-2.3)
A 		56.2
(1.4)
P 		76.9
(3)
P 		76
B 15.3
(-2.1)
A 		1.7
(-3)
A 		8.7
(-2.5)
A 		10.8
(-2.4)
A 		47.7
(0)
P 		93.7
(3)
P 		92
C 3.3
(-2.9)
A 		1.2
(-3)
A 		11.3
(-2.3)
A 		14.9
(-2)
A 		46.8
(0.2)
P 		85.4
(3)
P 		84
avr 6.4
(-2.6) 		1.1
(-3) 		8.8
(-2.5) 		11.8
(-2.2) 		50.2
(0.5) 		85.3
(3) 		84
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176419_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18757
Sequence Type Exemplar sequence
Representative Public ID Y71G12B.B NCBI
Target Description Y71G12B.B /REP_DB=WormBase Gene ID /WP=CE22913 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058495(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058495 NCBI Caenorhabditis elegans Y71G12B.27 (Y71G12B.27) mRNA, complete cds. 11/11 None
GENEFINDER00000001809 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1796855:1798646:-1 11/11 None
SNAP00000001795 ENSEMBL cdna:SNAP chromosome:CEL140:I:1797440:1798646:-1 11/11 None
Y71G12B.27 ENSEMBL cdna:known chromosome:CEL140:I:1797436:1798646:-1 gene:Y71G12B.27 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1797439-1798646(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71G12B.27
Entrez Gene 171745 Entrez gene
SwissProt Q95XM4 EMBL-EBI
WormBase CE22913 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7049 cell cycle inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4693 cyclin-dependent protein kinase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK73928 Hypothetical protein Y71G12B.27 [Caenorhabditis elegans] ref|NP_490896.1| Y71G12B.27 [Caenorhabditis elegans] 4.0E-64
blast AAK73928 Hypothetical protein Y71G12B.27 [Caenorhabditis elegans] ref|NP_490896.1| Y71G12B.27 [Caenorhabditis elegans] 3.0E-58
blast CAE66732 Hypothetical protein CBG12081 [Caenorhabditis briggsae] 1.0E-37
blast NP_001016170 CDC28 protein kinase regulatory subunit 2 [Xenopus tropicalis] 7.0E-23
blast NP_001016170 CDC28 protein kinase regulatory subunit 2 [Xenopus tropicalis] 8.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR000789 EMBL-EBI Cyclin-dependent kinase, regulatory subunit 8.2E-44
Sequence
Target Sequence 
>C. ELEGANS:176419_AT
gatatctactattcgccacgttacgaagatgatgaatacgaatatcgccacgtcattctt
ccgcaagccgtctcgagaaaagtgccaaagggaagacttcttagtgaggctgaatggaga
cgtgctggagttcaacagtcacttggatgggagcactacatggttcataacccggagaag
cacattctcttgttccgtcggaagcgccatttcacaaaagccgacgaggagcgtgccaaa
atggaattgttgagagatatggaagtgttcaatagagcgcaacagcaaacgacagcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATCTACTATTCGCCACGTTACG 144 425 19 Antisense
TACGAATATCGCCACGTCATTCTTC 385 649 55 Antisense
TTCCGCAAGCCGTCTCGAGAAAAGT 140 697 77 Antisense
GAGGCTGAATGGAGACGTGCTGGAG 3 407 124 Antisense
GACGTGCTGGAGTTCAACAGTCACT 584 375 137 Antisense
ACAGTCACTTGGATGGGAGCACTAC 258 107 153 Antisense
GGAGCACTACATGGTTCATAACCCG 91 521 168 Antisense
TTCTCTTGTTCCGTCGGAAGCGCCA 306 687 203 Antisense
GAAGCGCCATTTCACAAAAGCCGAC 250 343 219 Antisense
AAAGCCGACGAGGAGCGTGCCAAAA 355 123 235 Antisense
GAGCGCAACAGCAAACGACAGCAAC 500 385 293 Antisense
Sequence Source Affymetrix Proprietary Database