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[176417_at]

Description Y40A1A.2 /REP_DB=WormBase Gene ID /WP=CE24252 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 25
(3)
A 		2.9
(-3)
A 		3.5
(-2.8)
A 		10.7
(-0.9)
A 		22
B 3.9
(-2)
A 		3.1
(-3)
A 		3.9
(-2)
A 		8.1
(3)
A 		5
C 1.8
(-3)
A 		9.3
(-1.7)
A 		2.6
(-2.9)
A 		35.2
(3)
A 		33
avr 10.2
(-0.2) 		5.1
(-2.3) 		3.3
(-3) 		18
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 15.2
(0.5)
A 		2.1
(-2.9)
A 		25
(3)
A 		1.9
(-3)
A 		4.9
(-2.2)
A 		2.8
(-2.8)
A 		23
B 1.7
(-3)
A 		10.6
(2.9)
A 		8.2
(1.3)
A 		10.2
(2.6)
A 		3.9
(-1.5)
A 		10.8
(3)
A 		9
C 3
(-1.9)
A 		6.4
(0.1)
A 		6.7
(0.3)
A 		11.2
(3)
A 		5.1
(-0.7)
A 		1.2
(-3)
A 		10
avr 6.6
(-1.6) 		6.4
(-1.8) 		13.3
(3) 		7.8
(-0.8) 		4.6
(-3) 		4.9
(-2.8) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 9.1
(3)
A 		0.6
(-3)
A 		0.9
(-2.8)
A 		1.6
(-2.3)
A 		9
B 1.2
(-0.3)
A 		0.8
(-3)
A 		0.9
(-2.3)
A 		1.7
(3)
A 		1
C 0.6
(-3)
A 		2.7
(-0.6)
A 		0.9
(-2.7)
A 		5.9
(3)
A 		5
avr 3.6
(3) 		1.4
(-1.9) 		0.9
(-3) 		3.1
(1.9) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 2.8
(-0.2)
A 		0.7
(-2.8)
A 		5.4
(3)
A 		0.5
(-3)
A 		1.5
(-1.8)
A 		0.7
(-2.8)
A 		5
B 0.6
(-3)
A 		3.5
(2.1)
A 		2
(-0.5)
A 		2.7
(0.7)
A 		1.6
(-1.2)
A 		4
(3)
A 		3
C 1.1
(-0.8)
A 		2
(2.1)
A 		1.7
(1.1)
A 		2.3
(3)
A 		1.6
(0.8)
A 		0.4
(-3)
A 		2
avr 1.5
(-3) 		2.1
(-0.6) 		3
(3) 		1.8
(-1.8) 		1.6
(-2.6) 		1.7
(-2.2) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176417_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18165
Sequence Type Exemplar sequence
Representative Public ID Y40A1A.2 NCBI
Target Description Y40A1A.2 /REP_DB=WormBase Gene ID /WP=CE24252 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075967
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075967 NCBI Caenorhabditis elegans Y40A1A.2 (Y40A1A.2) mRNA, complete cds. None
Y40A1A.2 ENSEMBL cdna:known chromosome:CEL140:X:1990728:1991760:1 gene:Y40A1A.2 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1990727-1992659(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y40A1A.2
Entrez Gene 189777 Entrez gene
SwissProt Q8IU11 EMBL-EBI
WormBase CE35798 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN73855 Hypothetical protein Y40A1A.2 [Caenorhabditis elegans] ref|NP_508368.2| Y40A1A.2 [Caenorhabditis elegans] 2.0E-34
Sequence
Target Sequence 
>C. ELEGANS:176417_AT
tttccatgttgatctaccaccattccgaaatcctagtgatttattttcaagcaaagtgat
tgctatagagacttcagaagacattcatccaatgttcaataaatgcaaatgtgtggaaat
ttttggtggtccaaatgaaaatttatcaaccagtaatatgaacgagttgacgacaatgat
tgagttgaaacaaaaacttaacattcaatgctttttcgaaaataaagagttgatctacaa
tgttcctgagatagaattttaccacgccaaaaatatcacactacaagatttaagatcaat
gaattgtgaagtgatcagattatgtgtacattcaatcaaagaattggatctaaacaacat
agtattgtattggttaaatggaaaattgccgaacctccgaagactacggttgcacagcag
aatgagtcccattatgtatgaaaaaatcctgaaaggtattaaaaactatacatggcatcc
gaaacgtcgacctaaaatctattgcaatgaaatcgaacgattagactgtgaaagtggaag
agatatcgtgagcaacaacggaacagtagcaacactcctgctgttcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCATGTTGATCTACCACCATTC 683 669 270 Antisense
TCTACCACCATTCCGAAATCCTAGT 159 611 282 Antisense
GAGACTTCAGAAGACATTCATCCAA 514 393 337 Antisense
GAGTTGATCTACAATGTTCCTGAGA 690 397 496 Antisense
CTGAGATAGAATTTTACCACGCCAA 338 233 515 Antisense
GAAAATTGCCGAACCTCCGAAGACT 481 353 650 Antisense
GAACCTCCGAAGACTACGGTTGCAC 484 343 660 Antisense
GGTTGCACAGCAGAATGAGTCCCAT 563 507 677 Antisense
ACATGGCATCCGAAACGTCGACCTA 675 103 739 Antisense
AACGTCGACCTAAAATCTATTGCAA 179 143 752 Antisense
AGTAGCAACACTCCTGCTGTTCAAT 327 63 834 Antisense
Sequence Source Affymetrix Proprietary Database