[Home] | [Total List]

[176416_at]

Description C44B7.2A /REP_DB=WormBase Gene ID /WP=CE25811 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 47      6grp_highest_nonorm > 83      6grp_total > 48      4grp_total > 45      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 478
1 2 3 4 range
A 638.5
(3)
P 		495.2
(-0.3)
A 		378.2
(-3)
M 		520.6
(0.3)
P 		260
B 554.1
(1.5)
A 		605.8
(3)
A 		548.6
(1.4)
A 		397.5
(-3)
P 		208
C 832.3
(3)
P 		569.7
(-0.3)
A 		448.9
(-1.8)
A 		354
(-3)
M 		478
avr 675
(3) 		556.9
(0.2) 		458.6
(-2.2) 		424
(-3) 		251

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 357
1 2 3 4 5 6 range
A 434.8
(-1.1)
P 		390.3
(-3)
P 		440.3
(-0.9)
P 		400.7
(-2.6)
P 		416.6
(-1.9)
P 		530.3
(3)
P 		140
B 506.2
(2.3)
P 		476.7
(1.2)
P 		367
(-3)
P 		375
(-2.7)
P 		444.1
(-0.1)
P 		524.7
(3)
P 		158
C 713.5
(3)
P 		356.6
(-3)
P 		478.1
(-1)
P 		420.4
(-1.9)
P 		368.3
(-2.8)
P 		548.8
(0.2)
P 		357
avr 551.5
(3) 		407.9
(-2.6) 		428.5
(-1.8) 		398.7
(-3) 		409.7
(-2.6) 		534.6
(2.3) 		153
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 216
1 2 3 4 range
A 232.5
(3)
P 		107.5
(-1.8)
A 		98.9
(-2.1)
M 		76.2
(-3)
P 		156
B 176.7
(3)
A 		149.6
(1.2)
A 		127.1
(-0.2)
A 		84.7
(-3)
P 		92
C 275.5
(3)
P 		163.8
(-0.1)
A 		156.5
(-0.3)
A 		59.7
(-3)
M 		216
avr 228.2
(3) 		140.3
(-0.4) 		127.5
(-0.9) 		73.5
(-3) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 80.2
(-3)
P 		138.8
(3)
P 		95.9
(-1.4)
P 		101.6
(-0.8)
P 		125.7
(1.7)
P 		129.1
(2)
P 		59
B 176.1
(1.9)
P 		158.7
(0.9)
P 		89.1
(-3)
P 		99.3
(-2.4)
P 		180.4
(2.1)
P 		195.7
(3)
P 		107
C 264.5
(3)
P 		108.8
(-2.2)
P 		121.7
(-1.8)
P 		84.5
(-3)
P 		119.2
(-1.8)
P 		183.7
(0.3)
P 		180
avr 173.6
(3) 		135.4
(0.1) 		102.2
(-2.5) 		95.1
(-3) 		141.8
(0.6) 		169.5
(2.7) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176416_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4962
Sequence Type Exemplar sequence
Representative Public ID C44B7.2A NCBI
Target Description C44B7.2A /REP_DB=WormBase Gene ID /WP=CE25811 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063010(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063010 NCBI Caenorhabditis elegans C44B7.2a (C44B7.2) mRNA, complete cds. 11/11 A 
SNAP00000013951 ENSEMBL cdna:SNAP chromosome:CEL140:II:6899569:6901523:1 11/11 None
GENEFINDER00000013960 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6899583:6901523:1 11/11 None
C44B7.2a.2 ENSEMBL cdna:known chromosome:CEL140:II:6898680:6901651:1 gene:C44B7.2 11/11 A 
C44B7.2a.1 ENSEMBL cdna:known chromosome:CEL140:II:6898680:6901708:1 gene:C44B7.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063012 2/11 Cross Hyb Matching Probes None
C44B7.1.2 2/11 Cross Hyb Matching Probes A 
C44B7.1.3 2/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
3565706 2 1 NM_063010 176416_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6898675-6901519(+) 100.0 100.0
Public Domain and Genome References
Ensembl C44B7.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL16320 Hypothetical protein C44B7.2a [Caenorhabditis elegans] ref|NP_495411.2| C44B7.2a [Caenorhabditis elegans] 0.0
blast T15805 hypothetical protein C44B7.2 - Caenorhabditis elegans 0.0
blast CAE65989 Hypothetical protein CBG11180 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 4.4E-9
Sequence
Target Sequence 
>C. ELEGANS:176416_AT
ggttcaccatctttcaaggactactcttcatctcgaaatcagagattttccactcctgag
ctcgctgccaagaatcgtatcattttcccaacaaatacacttcattggttcaatgctcct
ggaactatggatgaacaagctctgctcgatttgatggctgaaaaaactgagcacaaacca
gtaaaaatcgacatcttcccatcaagaaatgaacgatcagccgccggaactgctgaattt
gaaactgtcgagattgctaacgaagttctggctcttgttaatcatactccagtgaatagt
ccatatggaagtgctccattcattgtaaaatgggcatacgctactcctcgccgatgggat
ggtagtggcggtgaaccgccccgatatgaagaaggtggagatggagagagaaaagaagga
ttcattcagcctgcacatagaccatctccgtcattccgtggacgtggtcgaggctatggt
gattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTCACCATCTTTCAAGGACTACT 500 505 1141 Antisense
GGACTACTCTTCATCTCGAAATCAG 211 525 1158 Antisense
TCAGAGATTTTCCACTCCTGAGCTC 23 625 1179 Antisense
AGCTCGCTGCCAAGAATCGTATCAT 219 81 1199 Antisense
GATCAGCCGCCGGAACTGCTGAATT 229 421 1355 Antisense
GGCTCTTGTTAATCATACTCCAGTG 505 539 1410 Antisense
TAAAATGGGCATACGCTACTCCTCG 704 639 1466 Antisense
TACTCCTCGCCGATGGGATGGTAGT 343 645 1482 Antisense
GTAGTGGCGGTGAACCGCCCCGATA 215 401 1502 Antisense
CATTCAGCCTGCACATAGACCATCT 169 217 1563 Antisense
GACGTGGTCGAGGCTATGGTGATTC 619 377 1601 Antisense
Sequence Source Affymetrix Proprietary Database