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[176413_at]

Description F28A10.7 /REP_DB=WormBase Gene ID /WP=CE19412 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 40      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 5.8
(-3)
A 		9.4
(1.8)
A 		9.6
(2.1)
A 		10.3
(3)
A 		5
B 8.1
(-2.6)
A 		7.9
(-2.7)
A 		56.5
(3)
A 		5
(-3)
A 		52
C 4.6
(-3)
A 		8.9
(-0.6)
A 		5.8
(-2.3)
A 		15.3
(3)
A 		11
avr 6.2
(-3) 		8.7
(-2.2) 		24
(3) 		10.2
(-1.7) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 22.3
(3)
A 		7.7
(-1.6)
A 		4.9
(-2.5)
A 		5.1
(-2.5)
A 		18.7
(1.9)
A 		3.4
(-3)
A 		19
B 6.3
(-2.5)
A 		6
(-2.7)
A 		7.4
(-2.1)
A 		8.6
(-1.7)
A 		5.1
(-3)
A 		20.9
(3)
A 		16
C 8.2
(-2.2)
A 		5.2
(-3)
A 		6.1
(-2.8)
A 		17.7
(0.2)
A 		13.6
(-0.9)
A 		28.9
(3)
A 		24
avr 12.3
(0.2) 		6.3
(-2.9) 		6.1
(-3) 		10.5
(-0.7) 		12.5
(0.3) 		17.7
(3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.1
(0.6)
A 		2
(0)
A 		2.5
(3)
A 		1.5
(-3)
A 		1
B 2.6
(-2.3)
A 		2
(-2.6)
A 		13.1
(3)
A 		1.1
(-3)
A 		12
C 1.5
(-3)
A 		2.6
(3)
A 		2
(-0.3)
A 		2.6
(3)
A 		1
avr 2.1
(-2.4) 		2.2
(-2.3) 		5.9
(3) 		1.7
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 4.1
(1)
A 		2.7
(-0.7)
A 		1.1
(-2.6)
A 		1.3
(-2.4)
A 		5.7
(3)
A 		0.8
(-3)
A 		5
B 2.2
(-2.6)
A 		2
(-2.8)
A 		1.8
(-3)
A 		2.3
(-2.5)
A 		2.1
(-2.7)
A 		7.8
(3)
A 		6
C 3
(-2)
A 		1.6
(-3)
A 		1.6
(-3)
A 		3.6
(-1.5)
A 		4.4
(-0.9)
A 		9.7
(3)
A 		8
avr 3.1
(-0.9) 		2.1
(-2.2) 		1.5
(-3) 		2.4
(-1.8) 		4.1
(0.4) 		6.1
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176413_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5695
Sequence Type Exemplar sequence
Representative Public ID F28A10.7 NCBI
Target Description F28A10.7 /REP_DB=WormBase Gene ID /WP=CE19412 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061430(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061430 NCBI Caenorhabditis elegans F28A10.7 (F28A10.7) mRNA, complete cds. 11/11 None
SNAP00000009513 ENSEMBL cdna:SNAP chromosome:CEL140:II:845294:845692:-1 11/11 None
GENEFINDER00000009521 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:845294:845692:-1 11/11 None
F28A10.7 ENSEMBL cdna:known chromosome:CEL140:II:845294:845692:-1 gene:F28A10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:845293-845692(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F28A10.7
Entrez Gene 185032 Entrez gene
SwissProt Q95YB3 EMBL-EBI
WormBase CE19412 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4623 phospholipase A2 activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK85473 Hypothetical protein F28A10.7 [Caenorhabditis elegans] ref|NP_493831.1| F28A10.7 [Caenorhabditis elegans] 1.0E-54
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493831.1 1 55-77
F28A10.7 1 55-77
SNAP00000009513 1 55-77
GENEFINDER00000009521 1 55-77
Sequence
Target Sequence 
>C. ELEGANS:176413_AT
aatatgttctttcttcggagtacgatgattgtgttgaagacgacacgtgcatgaggacta
actctatgtatctggaatgctgcgtcaagcacagatactgccgatggtatggaaacaccg
gctttttcatcctcatgctctttgtcgtcattatttgtataattgtatccgtcgctgcaa
gtgtcgtttgttgctgtacgagttggcgtaccggagtcggacaagacgatccggatcgtg
agcattttgaagacatctgcgaggagaacactgtttcccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATATGTTCTTTCTTCGGAGTACGA 21 173 56 Antisense
GACGACACGTGCATGAGGACTAACT 496 379 94 Antisense
CTATGTATCTGGAATGCTGCGTCAA 81 225 119 Antisense
GCTGCGTCAAGCACAGATACTGCCG 398 297 134 Antisense
ATGGAAACACCGGCTTTTTCATCCT 708 51 164 Antisense
CTCATGCTCTTTGTCGTCATTATTT 542 229 187 Antisense
GTATAATTGTATCCGTCGCTGCAAG 280 453 212 Antisense
GTCGCTGCAAGTGTCGTTTGTTGCT 429 473 226 Antisense
GAGTTGGCGTACCGGAGTCGGACAA 361 397 255 Antisense
GATCCGGATCGTGAGCATTTTGAAG 580 415 283 Antisense
CTGCGAGGAGAACACTGTTTCCCAT 354 233 312 Antisense
Sequence Source Affymetrix Proprietary Database