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[176412_at]

Description Y71G12A.B /REP_DB=WormBase Gene ID /WP=CE25577 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 85      4grp_total > 52      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 106.2
(3)
A 		81.8
(1.5)
A 		54.7
(-0.2)
A 		8.9
(-3)
A 		97
B 51.2
(2.2)
A 		17.1
(-3)
A 		45.3
(1.3)
A 		56.2
(3)
A 		39
C 32
(-3)
A 		103.5
(3)
A 		58.7
(-0.8)
A 		32.7
(-2.9)
A 		72
avr 63.1
(2.2) 		67.5
(3) 		52.9
(0.5) 		32.6
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 12.5
(-3)
A 		59.7
(-0.5)
A 		53
(-0.9)
A 		120.8
(2.7)
A 		113.2
(2.3)
A 		127.5
(3)
A 		115
B 79.5
(1.3)
A 		30.2
(-3)
A 		81.7
(1.5)
A 		88.5
(2.1)
A 		99.1
(3)
A 		68.3
(0.3)
A 		69
C 33.3
(-3)
A 		74.2
(-0.5)
A 		101.5
(1.2)
A 		90.3
(0.5)
A 		92.6
(0.7)
P 		130.3
(3)
A 		97
avr 41.8
(-3) 		54.7
(-1.8) 		78.7
(0.3) 		99.9
(2.2) 		101.6
(2.4) 		108.7
(3) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 38.7
(3)
A 		17.7
(-0.4)
A 		14.3
(-0.9)
A 		1.3
(-3)
A 		37
B 16.3
(3)
A 		4.2
(-3)
A 		10.5
(0.1)
A 		12
(0.9)
A 		12
C 10.6
(-1.7)
A 		29.8
(3)
A 		20.4
(0.7)
A 		5.5
(-3)
A 		24
avr 21.9
(3) 		17.2
(1.2) 		15.1
(0.4) 		6.3
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 2.3
(-3)
A 		21.2
(0.6)
A 		11.5
(-1.3)
A 		30.6
(2.3)
A 		34.2
(3)
A 		31
(2.4)
A 		32
B 27.7
(0.5)
A 		10.1
(-3)
A 		19.8
(-1.1)
A 		23.4
(-0.4)
A 		40.3
(3)
A 		25.5
(0.1)
A 		30
C 12.4
(-3)
A 		22.7
(-1)
A 		25.8
(-0.4)
A 		18.2
(-1.9)
A 		30
(0.4)
P 		43.6
(3)
A 		31
avr 14.1
(-3) 		18
(-1.9) 		19
(-1.6) 		24.1
(-0.1) 		34.8
(3) 		33.4
(2.6) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176412_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18668
Sequence Type Exemplar sequence
Representative Public ID Y71G12A.B NCBI
Target Description Y71G12A.B /REP_DB=WormBase Gene ID /WP=CE25577 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058513(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058513 NCBI Caenorhabditis elegans Y71G12A.4 (Y71G12A.4) mRNA, complete cds. 9/11 A 
SNAP00000037832 ENSEMBL cdna:SNAP chromosome:CEL140:I:1889287:1893986:-1 9/11 None
GENEFINDER00000037837 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1890764:1895530:-1 11/11 None
Y71G12A.4 ENSEMBL cdna:known chromosome:CEL140:I:1885206:1894864:-1 gene:Y71G12A.4 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1890763-1894910(-) 97.34 97.34
Public Domain and Genome References
Gene Title
Ensembl Y71G12A.4
Entrez Gene 171759 Entrez gene
SwissProt Q9BL52 EMBL-EBI
WormBase CE30323 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31567 Hypothetical protein Y71G12A.4 [Caenorhabditis elegans] ref|NP_490914.2| Y71G12A.4 [Caenorhabditis elegans] 0.0
blast CAE74474 Hypothetical protein CBG22222 [Caenorhabditis briggsae] 0.0
blast CAE46664 Hypothetical protein F01D5.7b [Caenorhabditis elegans] ref|NP_001022067.1| F01D5.7b [Caenorhabditis elegans] 8.0E-28
blast CAE46664 Hypothetical protein F01D5.7b [Caenorhabditis elegans] ref|NP_001022067.1| F01D5.7b [Caenorhabditis elegans] 1.0E-27
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490914.2 1 86-105
Y71G12A.4 1 86-105
SNAP00000037832 1 52-71
GENEFINDER00000037837 1 108-127
Sequence
Target Sequence 
>C. ELEGANS:176412_AT
aagaatcggcagagactccgttcccccaacctcatcatcttctcgcaacccaactcctcg
gaccttggctgctgcttgatgatggatccaaactttgcggatatcgctgactttcttcag
tgtgatcttttgatctacgactatcccgggtacggtgtcagcgagggaacgacaaatgag
aagaatgtctacgctgctgtggaggcggtgatgaagtacgcgatgggcacgttgggctac
tcacaggacaagatcattctcattggattcagtttgggcacggcggcgatggttcatgtt
gccgagatgtataaggtaaacttggtaggcctgtgtgcctatatgcttgcctaccgtaag
ggccaggttgccgcagtcgtgctcattgcaccattcacttcgttcttccgaatcgtgtgc
cgccgcccatcgataatccgcccgtggttcgacatgttcccaagcttggaaaagtccaaa
ggaattggctcaccaacgctgatttgtcacgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAATCGGCAGAGACTCCGTTCCC 708 151 703 Antisense
ACCTTGGCTGCTGCTTGATGATGGA 617 85 764 Antisense
GCGGATATCGCTGACTTTCTTCAGT 462 293 799 Antisense
CGACTATCCCGGGTACGGTGTCAGC 345 245 840 Antisense
AGAATGTCTACGCTGCTGTGGAGGC 338 75 884 Antisense
CACGGCGGCGATGGTTCATGTTGCC 323 199 981 Antisense
AGGCCTGTGTGCCTATATGCTTGCC 555 53 1029 Antisense
TATGCTTGCCTACCGTAAGGGCCAG 103 505 1044 Antisense
AGTCGTGCTCATTGCACCATTCACT 315 59 1077 Antisense
TTCACTTCGTTCTTCCGAATCGTGT 368 685 1096 Antisense
CTCACCAACGCTGATTTGTCACGGA 50 227 1191 Antisense
Sequence Source Affymetrix Proprietary Database