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[176409_at]

Description C52D10.3 /REP_DB=WormBase Gene ID /WP=CE17588 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 62      6grp_total > 72      4grp_total > 40      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 53.1
(-3)
A 		89
(3)
A 		78.3
(1.2)
P 		61.1
(-1.7)
P 		36
B 6.9
(-3)
A 		64.4
(0.7)
A 		100.5
(3)
P 		63.8
(0.6)
A 		94
C 45.7
(-3)
A 		82.5
(0)
A 		118.2
(3)
P 		110.6
(2.4)
A 		73
avr 35.2
(-3) 		78.6
(1.1) 		99
(3) 		78.5
(1.1) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 37.3
(-2.5)
A 		72.6
(-0.6)
P 		138.7
(3)
P 		129
(2.5)
P 		111.5
(1.5)
P 		27.6
(-3)
A 		111
B 66.2
(-3)
P 		68.8
(-2.8)
P 		116.9
(1.4)
P 		109.9
(0.8)
P 		135.1
(3)
P 		66.1
(-3)
P 		69
C 61.1
(-1.8)
P 		68.6
(-1.4)
P 		140.9
(3)
P 		76.1
(-0.9)
A 		100.1
(0.5)
P 		42
(-3)
A 		99
avr 54.9
(-2.3) 		70
(-1.3) 		132.2
(3) 		105
(1.1) 		115.6
(1.9) 		45.2
(-3) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 19.4
(2.4)
A 		19.3
(2.4)
A 		20.5
(3)
P 		8.9
(-3)
P 		12
B 2.2
(-3)
A 		15.9
(0.9)
A 		23.3
(3)
P 		13.6
(0.2)
A 		21
C 15.1
(-3)
A 		23.7
(-1)
A 		41.2
(3)
P 		18.7
(-2.2)
A 		26
avr 12.2
(-3) 		19.6
(-0.2) 		28.3
(3) 		13.7
(-2.4) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 6.9
(-3)
A 		25.8
(1.3)
P 		30.2
(2.2)
P 		32.7
(2.8)
P 		33.6
(3)
P 		6.7
(-3)
A 		27
B 23
(-3)
P 		22.9
(-3)
P 		28.4
(-2)
P 		29.1
(-1.8)
P 		54.9
(3)
P 		24.6
(-2.7)
P 		32
C 22.7
(-0.6)
P 		20.9
(-1.1)
P 		35.9
(3)
P 		15.3
(-2.7)
A 		32.4
(2)
P 		14.1
(-3)
A 		22
avr 17.5
(-2.4) 		23.2
(-1.1) 		31.5
(0.9) 		25.7
(-0.5) 		40.3
(3) 		15.1
(-3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176409_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8760
Sequence Type Exemplar sequence
Representative Public ID C52D10.3 NCBI
Target Description C52D10.3 /REP_DB=WormBase Gene ID /WP=CE17588 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070646
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C52D10.3 ENSEMBL cdna:known chromosome:CEL140:IV:17176433:17182333:1 gene:C52D10.3 None
SNAP00000030647 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17180167:17182333:1 None
NM_070646 NCBI Caenorhabditis elegans C52D10.3 (C52D10.3) mRNA, complete cds. None
GENEFINDER00000030654 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17176453:17182620:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17180264-17182287(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C52D10.3
Entrez Gene 3565402 Entrez gene
SwissProt Q966N6 EMBL-EBI
WormBase CE36281 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503047 C52D10.3 [Caenorhabditis elegans] gb|AAK77206.2| Hypothetical protein C52D10.3 [Caenorhabditis elegans] 6.0E-62
blast NP_503047 C52D10.3 [Caenorhabditis elegans] gb|AAK77206.2| Hypothetical protein C52D10.3 [Caenorhabditis elegans] 7.0E-62
blast CAE57404 Hypothetical protein CBG00357 [Caenorhabditis briggsae] 9.0E-60
blast CAE57404 Hypothetical protein CBG00357 [Caenorhabditis briggsae] 5.0E-54
blast CAE57404 Hypothetical protein CBG00357 [Caenorhabditis briggsae] 9.0E-51
blast NP_503047 C52D10.3 [Caenorhabditis elegans] gb|AAK77206.2| Hypothetical protein C52D10.3 [Caenorhabditis elegans] 3.0E-34
blast AAC19265 Hypothetical protein ZK1055.7 [Caenorhabditis elegans] ref|NP_504680.1| ZK1055.7 [Caenorhabditis elegans] 7.0E-9
Sequence
Target Sequence 
>C. ELEGANS:176409_AT
gcgaatcgacgtgcttgatggggtggctgcgcagaagctcgattttttccatcccccaaa
aaatttggatcacaaaatcataaaatgtataaatttttgttctcaaacccaccgcgaaat
tttgttgttaattttgttaactgaattttttattaacttcaactttcccacatttttcaa
atatttcctcaaaactgaaaaaattaaaaaaaaaaaatatatttgcgcaattgttcttaa
aaaagtttttttttccgttcacgaaaaaaaagctgtttcacatgcaacatctattccgtt
taatttccatttaatcgttatgacgaacaattcaactctactgcttacatccgctttgaa
acttaattttccagatttcctccggcccggcttcaatgggcttttcgggccaatgctctt
cgagcattccagcttccgggagccagccccacctcactcgccgtcacacagtcactggcc
aggagccgaatccgttggcgatgagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGAATCGACGTGCTTGATGGGGTG 442 287 114 Antisense
TGATGGGGTGGCTGCGCAGAAGCTC 337 567 129 Antisense
CGCAGAAGCTCGATTTTTTCCATCC 661 251 143 Antisense
TTCTCAAACCCACCGCGAAATTTTG 702 671 213 Antisense
GTTTCACATGCAACATCTATTCCGT 83 451 388 Antisense
GAACAATTCAACTCTACTGCTTACA 294 353 438 Antisense
ACTGCTTACATCCGCTTTGAAACTT 558 95 453 Antisense
CGGCCCGGCTTCAATGGGCTTTTCG 389 239 496 Antisense
TTTCGGGCCAATGCTCTTCGAGCAT 230 669 516 Antisense
ACAGTCACTGGCCAGGAGCCGAATC 107 109 581 Antisense
GAGCCGAATCCGTTGGCGATGAGCC 176 385 596 Antisense
Sequence Source Affymetrix Proprietary Database