[Home] | [Total List]

[176408_s_at]

Description Y71F9AR.A /REP_DB=WormBase Gene ID /WP=CE26245 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 96      4grp_highest_8_8 > 52      4grp_high_8_8 > 17      6grp_highest_nonorm > 82      6grp_total > 96      4grp_total > 31      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 271
1 2 3 4 range
A 351.7
(3)
P 		264.3
(0.2)
P 		163.6
(-3)
P 		297.1
(1.3)
P 		188
B 416.9
(3)
P 		163.6
(-3)
P 		174.5
(-2.7)
P 		277.1
(-0.3)
P 		253
C 424.4
(3)
P 		153.3
(-3)
P 		206.1
(-1.8)
P 		301.2
(0.3)
P 		271
avr 397.7
(3) 		193.7
(-2.7) 		181.4
(-3) 		291.8
(0.1) 		216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 335.5
(-2.1)
P 		338.7
(-1.9)
P 		320.3
(-3)
P 		376.1
(0.2)
P 		419.2
(2.6)
P 		425.4
(3)
P 		105
B 362.5
(-0.2)
P 		318.6
(-3)
P 		337.3
(-1.8)
P 		361.1
(-0.3)
P 		408.3
(2.6)
P 		413.9
(3)
P 		95
C 285
(-3)
P 		296
(-2.6)
P 		470.2
(3)
P 		343.5
(-1.1)
P 		363.4
(-0.5)
P 		415.5
(1.2)
P 		185
avr 327.7
(-2.4) 		317.8
(-3) 		375.9
(0.5) 		360.2
(-0.5) 		397
(1.7) 		418.3
(3) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 128
(3)
P 		57.4
(-2)
P 		42.8
(-3)
P 		43.5
(-3)
P 		85
B 133
(3)
P 		40.4
(-3)
P 		40.4
(-3)
P 		59
(-1.8)
P 		93
C 140.5
(3)
P 		44.1
(-3)
P 		71.8
(-1.3)
P 		50.8
(-2.6)
P 		96
avr 133.8
(3) 		47.3
(-3) 		51.7
(-2.7) 		51.1
(-2.7) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 61.8
(-3)
P 		120.5
(2.4)
P 		69.7
(-2.3)
P 		95.4
(0.1)
P 		126.5
(3)
P 		103.6
(0.9)
P 		65
B 126.1
(0.2)
P 		106.1
(-1.3)
P 		81.9
(-3)
P 		95.6
(-2)
P 		165.9
(3)
P 		154.3
(2.2)
P 		84
C 105.6
(0.1)
P 		90.3
(-1.2)
P 		119.7
(1.3)
P 		69.1
(-3)
P 		117.6
(1.2)
P 		139.1
(3)
P 		70
avr 97.8
(-1.7) 		105.6
(-0.7) 		90.4
(-2.6) 		86.7
(-3) 		136.7
(3) 		132.3
(2.5) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176408_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18692
Sequence Type Exemplar sequence
Representative Public ID Y71F9AR.A NCBI
Target Description Y71F9AR.A /REP_DB=WormBase Gene ID /WP=CE26245 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058682(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058682 NCBI Caenorhabditis elegans Y71F9AR.3 (Y71F9AR.3) mRNA, complete cds. 11/11 None
Y71F9AR.3 ENSEMBL cdna:known chromosome:CEL140:I:2986188:2995914:-1 gene:Y71F9AR.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2986187-2995914(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71F9AR.3
Entrez Gene 171869 Entrez gene
SwissProt Q95XT1 EMBL-EBI
WormBase CE26245 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68586 Hypothetical protein Y71F9AR.3 [Caenorhabditis elegans] ref|NP_491083.1| Y71F9AR.3 [Caenorhabditis elegans] 0.0
blast CAE60557 Hypothetical protein CBG04186 [Caenorhabditis briggsae] 2.0E-68
Sequence
Target Sequence 
>C. ELEGANS:176408_S_AT
gaaactcacccaatgtcacatgatttctgatgatcttctcgcggttaccatgacttttca
caaacgccgatcaagccctcttcacattggagccaccatctcaattttggactcatcgat
taccgtatacccgaattaccacgaatacctgaagcttctcttcactcatcaccttcctga
cctattgccacgtcactggacgtacctgaatccgacaccagcacacgagcagccatggtt
caaaaatagtttgataaatgtctcaaatccggatgaattgaacaatttcgatcgactatt
tgaagtatatcatattttgatttccaattttaataatgtgaaaagcacatcaaatccgtt
gacagatgcattttttaatgctgcagaagcagaggattttatgaatatgggaaaatccac
gaatcactatccccgggatacctcggcgtggaatcattttcatgagaatgaagaattcgg
tgcaacactgtactatcatccaattgatccagttttatttcttaaagttggatcattttg
gttggttgctcatcgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTCACCCAATGTCACATGATT 280 357 1647 Antisense
TCTTCTCGCGGTTACCATGACTTTT 408 617 1680 Antisense
CTTCACATTGGAGCCACCATCTCAA 354 219 1726 Antisense
TTTGGACTCATCGATTACCGTATAC 163 667 1752 Antisense
TACCTGAAGCTTCTCTTCACTCATC 362 649 1792 Antisense
GTCACTGGACGTACCTGAATCCGAC 558 463 1838 Antisense
GAAAATCCACGAATCACTATCCCCG 683 353 2057 Antisense
GAATCACTATCCCCGGGATACCTCG 327 299 2067 Antisense
GATACCTCGGCGTGGAATCATTTTC 286 423 2083 Antisense
GTGCAACACTGTACTATCATCCAAT 382 481 2126 Antisense
CATTTTGGTTGGTTGCTCATCGTCA 530 215 2180 Antisense
Sequence Source Affymetrix Proprietary Database