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[176407_at]

Description F28A10.1 /REP_DB=WormBase Gene ID /WP=CE19406 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 11.7
(-3)
A 		19
(-0.3)
A 		13.9
(-2.2)
A 		28
(3)
A 		16
B 12.8
(-0.1)
A 		4.6
(-2.4)
A 		2.6
(-3)
A 		23.7
(3)
A 		21
C 36.8
(0.3)
A 		24.9
(-1.4)
A 		13.6
(-3)
A 		55.8
(3)
A 		42
avr 20.4
(-0.6) 		16.2
(-1.6) 		10
(-3) 		35.8
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 16.1
(3)
A 		14.8
(2.4)
A 		4
(-3)
A 		13.5
(1.7)
A 		10.8
(0.4)
A 		6.5
(-1.8)
A 		12
B 0.9
(-3)
A 		19.5
(3)
A 		5.6
(-1.5)
A 		3.6
(-2.1)
A 		8.2
(-0.6)
A 		3.4
(-2.2)
A 		19
C 8.4
(-1.8)
A 		26
(3)
A 		6.4
(-2.4)
A 		8.5
(-1.8)
A 		7.1
(-2.2)
A 		4.1
(-3)
A 		22
avr 8.5
(-1.5) 		20.1
(3) 		5.3
(-2.8) 		8.5
(-1.5) 		8.7
(-1.4) 		4.7
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 4.3
(3)
A 		4.1
(1.3)
A 		3.6
(-3)
A 		4.1
(1.3)
A 		1
B 4.1
(1.7)
A 		1.1
(-2.3)
A 		0.6
(-3)
A 		5.1
(3)
A 		5
C 12.2
(3)
A 		7.2
(-1)
A 		4.7
(-3)
A 		9.4
(0.8)
A 		8
avr 6.9
(3) 		4.1
(-1.3) 		3
(-3) 		6.2
(1.9) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 3
(-0.1)
A 		5.3
(3)
A 		0.9
(-3)
A 		3.4
(0.4)
A 		3.3
(0.3)
A 		1.6
(-2)
A 		4
B 0.3
(-3)
A 		6.5
(3)
A 		1.4
(-1.9)
A 		0.9
(-2.4)
A 		3.3
(-0.1)
A 		1.3
(-2)
A 		6
C 3.1
(-1.4)
A 		7.9
(3)
A 		1.6
(-2.8)
A 		1.7
(-2.7)
A 		2.3
(-2.2)
A 		1.4
(-3)
A 		7
avr 2.1
(-2.1) 		6.6
(3) 		1.3
(-3) 		2
(-2.2) 		3
(-1.1) 		1.4
(-2.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176407_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5949
Sequence Type Exemplar sequence
Representative Public ID F28A10.1 NCBI
Target Description F28A10.1 /REP_DB=WormBase Gene ID /WP=CE19406 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061423(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061423 NCBI Caenorhabditis elegans F28A10.1 (F28A10.1) mRNA, complete cds. 11/11 None
SNAP00000009504 ENSEMBL cdna:SNAP chromosome:CEL140:II:826193:827506:1 10/11 None
GENEFINDER00000009522 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:826193:827506:1 10/11 None
F28A10.1 ENSEMBL cdna:known chromosome:CEL140:II:826193:827506:1 gene:F28A10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:826192-827506(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F28A10.1
Entrez Gene 185027 Entrez gene
SwissProt Q95YC0 EMBL-EBI
WormBase CE19406 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK85466 Hypothetical protein F28A10.1 [Caenorhabditis elegans] ref|NP_493824.1| F28A10.1 [Caenorhabditis elegans] 0.0
blast AAK85466 Hypothetical protein F28A10.1 [Caenorhabditis elegans] ref|NP_493824.1| F28A10.1 [Caenorhabditis elegans] 1.0E-168
blast CAE74542 Hypothetical protein CBG22299 [Caenorhabditis briggsae] 2.0E-90
blast CAE74542 Hypothetical protein CBG22299 [Caenorhabditis briggsae] 2.0E-88
blast AAC24413 Hypothetical protein W09C3.3 [Caenorhabditis elegans] ref|NP_491428.2| W09C3.3 [Caenorhabditis elegans] 1.0E-75
Protein Domains
Database ID Description E-Value
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 7.1E-52
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 7.1E-52
Sequence
Target Sequence 
>C. ELEGANS:176407_AT
ggacaagacattaacgctgaggtgaaatttcaaaaggaaatgcaaaatattggactcaat
gtgtctttctatggagctgacccaattgtcgaaggaaattcagtgttatattcaaccatt
gggaaatattttccatttgctgttggagagaaagctgggttttcaacggccagtgtactt
ttggatggttgtgaaaactttaaaaaatcattatttattaacgaatttgcagaaagatac
ataaacatgccagtagttcatgtggatatatattactttttgaaagatattcttgataaa
aacgtaattgattatttctggatggattctgaatacgccgaatatgggacttttgatatt
ttctatgaaaatggaaaattggaacagttgggaattactttctgccaaatgagtttggag
gttcacagcccgagtaaagaacaaaaggaacaatttatgatattcattaaacgagtggtt
gaagaaaaatggtttgggttcttcttcactgaacaggtttcacaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACAAGACATTAACGCTGAGGTGA 192 527 364 Antisense
GACTCAATGTGTCTTTCTATGGAGC 413 373 416 Antisense
TTCAGTGTTATATTCAACCATTGGG 362 687 462 Antisense
GAAAGCTGGGTTTTCAACGGCCAGT 505 359 513 Antisense
AACGGCCAGTGTACTTTTGGATGGT 395 143 528 Antisense
GATACATAAACATGCCAGTAGTTCA 229 423 599 Antisense
GAATACGCCGAATATGGGACTTTTG 289 327 694 Antisense
TGGGAATTACTTTCTGCCAAATGAG 464 547 752 Antisense
GTTTGGAGGTTCACAGCCCGAGTAA 236 451 776 Antisense
AAATGGTTTGGGTTCTTCTTCACTG 19 101 850 Antisense
TTCTTCACTGAACAGGTTTCACACA 605 689 865 Antisense
Sequence Source Affymetrix Proprietary Database