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[176406_at]

Description Y47D7A.9 /REP_DB=WormBase Gene ID /WP=CE22056 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 2
(-3)
A 		10.8
(-0.6)
A 		4
(-2.5)
A 		24.4
(3)
A 		22
B 2
(-3)
A 		7.1
(0)
A 		8.9
(1.1)
A 		12.2
(3)
A 		10
C 6.6
(-2.7)
A 		7.1
(-2.6)
A 		4.4
(-3)
A 		45.8
(3)
A 		41
avr 3.5
(-3) 		8.3
(-1.8) 		5.8
(-2.4) 		27.5
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 4.1
(-0.7)
A 		2.2
(-2.5)
A 		1.6
(-3)
A 		4.9
(0)
A 		8.2
(3)
A 		5.7
(0.7)
A 		7
B 4.8
(1.2)
A 		3.3
(-0.7)
A 		1.5
(-3)
A 		6.2
(3)
A 		2.5
(-1.7)
A 		1.6
(-2.9)
A 		5
C 34.3
(3)
A 		5.1
(-2.7)
A 		3.8
(-3)
A 		5
(-2.8)
A 		14.1
(-1)
A 		5.6
(-2.6)
A 		31
avr 14.4
(3) 		3.5
(-2.4) 		2.3
(-3) 		5.4
(-1.5) 		8.3
(-0) 		4.3
(-2) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.7
(-3)
A 		2.3
(0.3)
A 		1
(-2.4)
A 		3.6
(3)
A 		3
B 0.6
(-3)
A 		1.7
(0.3)
A 		2.1
(1.5)
A 		2.6
(3)
A 		2
C 2.2
(-2.3)
A 		2
(-2.5)
A 		1.5
(-3)
A 		7.7
(3)
A 		6
avr 1.2
(-3) 		2
(-1.6) 		1.5
(-2.5) 		4.6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.7
(-1.9)
A 		0.8
(-1.6)
A 		0.3
(-3)
A 		1.2
(-0.5)
A 		2.5
(3)
A 		1.4
(-0)
A 		2
B 1.7
(3)
A 		1.1
(0.2)
A 		0.4
(-3)
A 		1.6
(2.5)
A 		1
(-0.2)
A 		0.6
(-2.1)
A 		1
C 12.7
(3)
A 		1.6
(-2.7)
A 		1
(-3)
A 		1
(-3)
A 		4.6
(-1.2)
A 		1.9
(-2.5)
A 		12
avr 5
(3) 		1.2
(-2.2) 		0.6
(-3) 		1.3
(-2) 		2.7
(-0.1) 		1.3
(-2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176406_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15647
Sequence Type Exemplar sequence
Representative Public ID Y47D7A.9 NCBI
Target Description Y47D7A.9 /REP_DB=WormBase Gene ID /WP=CE22056 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071821(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071821 NCBI Caenorhabditis elegans Y47D7A.9 (Y47D7A.9) mRNA, complete cds. 11/11 None
SNAP00000043264 ENSEMBL cdna:SNAP chromosome:CEL140:V:4423433:4423761:-1 11/11 None
GENEFINDER00000043278 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4423433:4423761:-1 11/11 None
Y47D7A.9 ENSEMBL cdna:known chromosome:CEL140:V:4423433:4423761:-1 gene:Y47D7A.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4423432-4423761(-) 100.0 100.0
chrV:4425980-4426291(-) 92.75 92.75
Public Domain and Genome References
Gene Title
Ensembl Y47D7A.9
Entrez Gene 189985 Entrez gene
SwissProt Q9N3U7 EMBL-EBI
WormBase CE22056 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60634 Hypothetical protein Y47D7A.9 [Caenorhabditis elegans] ref|NP_504222.1| Y47D7A.9 [Caenorhabditis elegans] 5.0E-26
blast AAF60633 Hypothetical protein Y47D7A.10 [Caenorhabditis elegans] ref|NP_504223.1| Y47D7A.10 [Caenorhabditis elegans] 5.0E-12
blast CAE56034 Hypothetical protein CBG23599 [Caenorhabditis briggsae] 5.0E-9
Sequence
Target Sequence 
>C. ELEGANS:176406_AT
ttgtccttgctcaatgtggatacccagttcctgatgcatatccagcatcttatccagttg
ctccttcatatccatctgcatctgtctactcggcaagctctatcagtaatagtgaaggtt
ctgttgatactgaatctaatgtagaattccgcaaacgtgccaaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTCCTTGCTCAATGTGGATACCC 317 707 47 Antisense
TGTGGATACCCAGTTCCTGATGCAT 5 555 61 Antisense
AGTTCCTGATGCATATCCAGCATCT 310 65 72 Antisense
TGCATATCCAGCATCTTATCCAGTT 499 579 81 Antisense
ATCCAGCATCTTATCCAGTTGCTCC 49 41 86 Antisense
TTCATATCCATCTGCATCTGTCTAC 166 689 111 Antisense
CTGTCTACTCGGCAAGCTCTATCAG 205 239 128 Antisense
ACTCGGCAAGCTCTATCAGTAATAG 502 99 134 Antisense
GAAGGTTCTGTTGATACTGAATCTA 274 335 160 Antisense
AATGTAGAATTCCGCAAACGTGCCA 646 163 184 Antisense
TAGAATTCCGCAAACGTGCCAAAGC 633 651 188 Antisense
Sequence Source Affymetrix Proprietary Database