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[176405_at]

Description Y105E8B.MM /REP_DB=WormBase Gene ID /WP=CE24096 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster 6grp_high1_10_10 > 94      4grp_highest_8_8 > 38      4grp_high_8_8 > 04      6grp_total > 85      4grp_total > 05      6grp_cgc > 67      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 229.7
(0.9)
P 		156.5
(-3)
P 		215.5
(0.1)
P 		269.1
(3)
P 		113
B 271.6
(3)
P 		202.4
(-1.5)
P 		178.9
(-3)
P 		261.2
(2.3)
P 		93
C 195.5
(-3)
P 		211.2
(-2.3)
P 		240.6
(-1.1)
P 		334.4
(3)
P 		139
avr 232.3
(-0.4) 		190
(-3) 		211.7
(-1.7) 		288.2
(3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 241
1 2 3 4 5 6 range
A 113.2
(-2.6)
P 		103.5
(-3)
P 		200.5
(0.6)
P 		125.8
(-2.2)
A 		265
(3)
P 		197.9
(0.5)
P 		162
B 108.1
(-3)
P 		135.2
(-2.2)
P 		144.9
(-1.9)
P 		250.5
(1.4)
P 		244.1
(1.2)
P 		302.9
(3)
P 		195
C 86.6
(-3)
A 		154.4
(-1.3)
P 		126.2
(-2)
P 		233.3
(0.6)
P 		129.5
(-1.9)
P 		327.9
(3)
P 		241
avr 102.6
(-3) 		131
(-2) 		157.2
(-1.1) 		203.2
(0.5) 		212.9
(0.8) 		276.2
(3) 		174
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 83.6
(3)
P 		34
(-3)
P 		56.3
(-0.3)
P 		39.4
(-2.3)
P 		50
B 86.6
(3)
P 		50
(-1.9)
P 		41.5
(-3)
P 		55.7
(-1.1)
P 		45
C 64.7
(-1.2)
P 		60.7
(-2.1)
P 		83.9
(3)
P 		56.4
(-3)
P 		28
avr 78.3
(3) 		48.2
(-3) 		60.6
(-0.5) 		50.5
(-2.5) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 20.9
(-3)
P 		36.8
(-1.4)
P 		43.7
(-0.7)
P 		31.9
(-1.9)
A 		80
(3)
P 		48.2
(-0.2)
P 		59
B 37.6
(-2.8)
P 		45
(-2.2)
P 		35.2
(-3)
P 		66.3
(-0.6)
P 		99.2
(1.9)
P 		112.9
(3)
P 		78
C 32.1
(-3)
A 		47.1
(-1.8)
P 		32.1
(-3)
P 		46.9
(-1.9)
P 		41.9
(-2.2)
P 		109.8
(3)
P 		78
avr 30.2
(-3) 		43
(-1.7) 		37
(-2.3) 		48.4
(-1.2) 		73.7
(1.3) 		90.3
(3) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176405_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18832
Sequence Type Exemplar sequence
Representative Public ID Y105E8B.MM NCBI
Target Description Y105E8B.MM /REP_DB=WormBase Gene ID /WP=CE24096 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061142(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061142 NCBI Caenorhabditis elegans Y105E8B.4 (Y105E8B.4) mRNA, complete cds. 11/11 None
GENEFINDER00000011750 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14652183:14659139:1 11/11 None
SNAP00000011734 ENSEMBL cdna:SNAP chromosome:CEL140:I:14655911:14659139:1 11/11 None
Y105E8B.4 ENSEMBL cdna:known chromosome:CEL140:I:14655900:14659558:1 gene:Y105E8B.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14655841-14659070(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol bath-40
Ensembl Y105E8B.4
Entrez Gene 173321 Entrez gene
SwissProt Q9NF14 EMBL-EBI
WormBase CE24096 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60850 Hypothetical protein Y105E8B.4 [Caenorhabditis elegans] ref|NP_493543.1| Y105E8B.4 [Caenorhabditis elegans] 0.0
blast CAE72607 Hypothetical protein CBG19798 [Caenorhabditis briggsae] 1.0E-171
blast CAE72607 Hypothetical protein CBG19798 [Caenorhabditis briggsae] 1.0E-149
blast CAB60849 Hypothetical protein Y105E8B.7 [Caenorhabditis elegans] ref|NP_493542.1| Y105E8B.7 [Caenorhabditis elegans] 1.0E-121
blast CAE64119 Hypothetical protein CBG08732 [Caenorhabditis briggsae] 3.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.4E-14
Pfam IPR005033 EMBL-EBI YEATS family 7.9E-20
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.4E-14
Sequence
Target Sequence 
>C. ELEGANS:176405_AT
acaccgtccatagagatgccattcgctcagataccgagagcacatgtggaaagtgaactg
gaaatgcttgccagcggcgacggaacagacatgacaatcgtggcgggaccacttgacgga
gaacgtgaacagtttcgtgtacacgcgtacaagcttcgcgcgcactctgacgtcttccag
atgatgctcagccatacggagatgcgtgagaatcaggagaaacgaatcgagattttggat
ttctcgccgacatctgtccgagcgatggttgaattcatatacgctggagtcatcaaatcg
gatatcgacgtttatcaggcggtcgatgtgatgcaaatcgccgaaaaatatcagattttg
gcgctgaaaatgacctgtgagcagcatttgttggaccggctcaatgtgaataatgtgctc
gagtgtattacacatgcggaacgatataatactgatgttttgtatgatgcttgcgttgat
tttgcaatccacaatcgtcaacatgtaatggctctgacgtcatggcgcaacttcatcagc
gatgagccggttttggcgagcaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACCGTCCATAGAGATGCCATTCG 260 109 592 Antisense
ATGCCATTCGCTCAGATACCGAGAG 471 41 607 Antisense
GCTTGCCAGCGGCGACGGAACAGAC 436 305 657 Antisense
AATCGTGGCGGGACCACTTGACGGA 41 163 687 Antisense
GTACACGCGTACAAGCTTCGCGCGC 339 461 730 Antisense
GCACTCTGACGTCTTCCAGATGATG 63 317 753 Antisense
GATGCTCAGCCATACGGAGATGCGT 509 413 774 Antisense
GTGAGCAGCATTTGTTGGACCGGCT 613 481 968 Antisense
ATGTAATGGCTCTGACGTCATGGCG 538 47 1094 Antisense
GTCATGGCGCAACTTCATCAGCGAT 395 467 1110 Antisense
GATGAGCCGGTTTTGGCGAGCAACT 461 411 1132 Antisense
Sequence Source Affymetrix Proprietary Database