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[176404_at]

Description Y19D10A.C /REP_DB=WormBase Gene ID /WP=CE21444 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 09      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 12.3
(-2.6)
A 		9.6
(-2.8)
A 		4.7
(-3)
A 		126.4
(3)
A 		122
B 30.8
(3)
A 		14.4
(-1.1)
A 		6.6
(-3)
A 		28.4
(2.4)
A 		24
C 14
(-2.6)
A 		44.4
(0.5)
A 		9.9
(-3)
A 		69.8
(3)
A 		60
avr 19
(-1.9) 		22.8
(-1.6) 		7.1
(-3) 		74.9
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 8.1
(-2)
A 		11
(-1.5)
A 		3.3
(-3)
A 		8.1
(-2)
A 		33.3
(3)
A 		20.9
(0.5)
A 		30
B 49.1
(1.9)
A 		12.3
(-2.2)
A 		59.5
(3)
A 		40.5
(0.9)
A 		8.5
(-2.6)
A 		5
(-3)
A 		55
C 17.3
(3)
A 		8.8
(-0.8)
A 		6.3
(-1.9)
A 		3.9
(-3)
A 		7.5
(-1.4)
A 		11.4
(0.4)
A 		13
avr 24.8
(3) 		10.7
(-3) 		23
(2.2) 		17.5
(-0.1) 		16.4
(-0.6) 		12.4
(-2.3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 4.5
(-1.9)
A 		2.1
(-2.7)
A 		1.2
(-3)
A 		18.5
(3)
A 		17
B 9.8
(3)
A 		3.6
(-1.5)
A 		1.5
(-3)
A 		6.1
(0.3)
A 		8
C 4.6
(-2.3)
A 		12.8
(3)
A 		3.5
(-3)
A 		11.8
(2.4)
A 		9
avr 6.3
(-0.5) 		6.2
(-0.5) 		2.1
(-3) 		12.1
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.5
(-2.5)
A 		3.9
(-0.9)
A 		0.7
(-3)
A 		2
(-2.2)
A 		10
(3)
A 		5.1
(-0.2)
A 		9
B 17.1
(3)
A 		4.1
(-2.1)
A 		14.4
(1.9)
A 		10.7
(0.5)
A 		3.5
(-2.4)
A 		1.9
(-3)
A 		15
C 6.4
(3)
A 		2.7
(-1)
A 		1.6
(-2.1)
A 		0.8
(-3)
A 		2.4
(-1.3)
A 		3.8
(0.2)
A 		6
avr 8.3
(3) 		3.6
(-3) 		5.6
(-0.4) 		4.5
(-1.9) 		5.3
(-0.8) 		3.6
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176404_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19516
Sequence Type Exemplar sequence
Representative Public ID Y19D10A.C NCBI
Target Description Y19D10A.C /REP_DB=WormBase Gene ID /WP=CE21444 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y19D10A.C
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y19D10A.C Y19D10A.C /REP_DB=WormBase Gene ID /WP=CE21444 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071256 10/11 Negative Strand Matching Probes A 
NM_071283 10/11 Negative Strand Matching Probes A 
SNAP00000008433 10/11 Negative Strand Matching Probes None
GENEFINDER00000008437 10/11 Negative Strand Matching Probes None
SNAP00000029974 10/11 Negative Strand Matching Probes None
GENEFINDER00000029978 10/11 Negative Strand Matching Probes None
Y19D10A.4 10/11 Negative Strand Matching Probes A 
C01B4.6 10/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2501711-2502131(-) 100.0 100.0
chrV:2393432-2393852(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:176404_AT
ggagctgccgagtggaattgtggctcgattgccaacgccttgttggccttgtaatgctcc
ccctttttgcctttacaatccaaaaatttcgacgcatagagatgaataaccgggtaagaa
gttgtgatggaaagttcaattccagacttttcgctccaaaatctcaacaactcctccgcg
tccttccccgactctttcagctgcttcccactccgaaaatcgaatccggtgtcggtgacg
gatcggatggctccagttgggcagaacgtatcgtccacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCTGCCGAGTGGAATTGTGGCT 630 521 29 Antisense
AATTGTGGCTCGATTGCCAACGCCT 379 179 44 Antisense
AACGCCTTGTTGGCCTTGTAATGCT 77 147 62 Antisense
TTGCCTTTACAATCCAAAAATTTCG 13 701 95 Antisense
AAGTTCAATTCCAGACTTTTCGCTC 444 155 160 Antisense
GACTTTTCGCTCCAAAATCTCAACA 551 371 173 Antisense
TTCCCACTCCGAAAATCGAATCCGG 106 695 233 Antisense
AAATCGAATCCGGTGTCGGTGACGG 571 87 245 Antisense
GGTGTCGGTGACGGATCGGATGGCT 683 497 256 Antisense
ATCGGATGGCTCCAGTTGGGCAGAA 335 27 270 Antisense
AGTTGGGCAGAACGTATCGTCCACC 669 63 283 Antisense
Sequence Source Affymetrix Proprietary Database