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[176401_s_at]

Description Y57E12B.A /REP_DB=WormBase Gene ID /WP=CE26550 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 93      4grp_total > 20      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 5.3
(-2.7)
A 		11.9
(-1.8)
A 		2.8
(-3)
A 		48.2
(3)
A 		45
B 20.1
(-0.3)
A 		29.6
(1.1)
A 		2
(-3)
A 		42.5
(3)
A 		41
C 12.8
(3)
A 		3.6
(-3)
A 		8
(-0.1)
A 		8.2
(-0)
A 		9
avr 12.7
(-1.2) 		15
(-0.8) 		4.3
(-3) 		33
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1253
1 2 3 4 5 6 range
A 4.6
(-3)
A 		4.4
(-3)
A 		5.2
(-3)
A 		433.9
(-0.9)
P 		1212.3
(3)
P 		159.9
(-2.2)
P 		1208
B 2.8
(-3)
A 		8.1
(-3)
A 		8.3
(-3)
A 		376.4
(-1.2)
P 		1254.2
(3)
P 		222.5
(-1.9)
P 		1251
C 1.3
(-3)
A 		4.5
(-3)
A 		3.9
(-3)
A 		439.5
(-0.8)
P 		1200
(3)
P 		243
(-1.8)
P 		1199
avr 2.9
(-3) 		5.7
(-3) 		5.8
(-3) 		416.6
(-1) 		1222.2
(3) 		208.5
(-2) 		1219
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.9
(-1.9)
A 		2.6
(-1.2)
A 		0.7
(-3)
A 		7
(3)
A 		6
B 6.4
(1.1)
A 		7.3
(1.7)
A 		0.5
(-3)
A 		9.1
(3)
A 		9
C 4.2
(3)
A 		1
(-3)
A 		2.8
(0.4)
A 		1.4
(-2.3)
A 		3
avr 4.2
(0.9) 		3.6
(0.1) 		1.3
(-3) 		5.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 509
1 2 3 4 5 6 range
A 0.8
(-3)
A 		1.5
(-3)
A 		1.1
(-3)
A 		110
(-1.2)
P 		365.8
(3)
P 		38.9
(-2.4)
P 		365
B 1
(-3)
A 		2.7
(-3)
A 		2
(-3)
A 		99.7
(-1.8)
P 		509.6
(3)
P 		83
(-2)
P 		509
C 0.5
(-3)
A 		1.4
(-3)
A 		1
(-3)
A 		88.4
(-1.6)
P 		388.3
(3)
P 		81.3
(-1.7)
P 		388
avr 0.8
(-3) 		1.9
(-3) 		1.4
(-3) 		99.4
(-1.6) 		421.2
(3) 		67.7
(-2) 		420
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176401_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19419
Sequence Type Exemplar sequence
Representative Public ID Y57E12B.A NCBI
Target Description Y57E12B.A /REP_DB=WormBase Gene ID /WP=CE26550 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072355(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072355 NCBI Caenorhabditis elegans Y57E12B.4 (Y57E12B.4) mRNA, complete cds. 11/11 A 
SNAP00000007823 ENSEMBL cdna:SNAP chromosome:CEL140:V:6948304:6950110:-1 11/11 None
Y57E12B.4 ENSEMBL cdna:known chromosome:CEL140:V:6948304:6952447:-1 gene:Y57E12B.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6948667-6952448(-) 97.1 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57E12B.4
Entrez Gene 179082 Entrez gene
SwissProt Q95XV0 EMBL-EBI
WormBase CE29892 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68538 Hypothetical protein Y57E12B.4 [Caenorhabditis elegans] ref|NP_504756.2| Y57E12B.4 [Caenorhabditis elegans] 0.0
blast AAK68538 Hypothetical protein Y57E12B.4 [Caenorhabditis elegans] ref|NP_504756.2| Y57E12B.4 [Caenorhabditis elegans] 1.0E-133
blast AAK68535 Hypothetical protein Y57E12B.1 [Caenorhabditis elegans] ref|NP_504757.1| Y57E12B.1 [Caenorhabditis elegans] 3.0E-21
blast XP_800520 PREDICTED: hypothetical protein XP_795427, partial [Strongylocentrotus purpuratus] 4.0E-14
blast AAN09644 CG32644-PB [Drosophila melanogaster] ref|NP_727652.1| CG32644-PB [Drosophila melanogaster] 1.0E-13
blast XP_800520 PREDICTED: hypothetical protein XP_795427, partial [Strongylocentrotus purpuratus] 4.0E-11
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504756.2 2 5-27,62-84
Y57E12B.4 2 5-27,62-84
Sequence
Target Sequence 
>C. ELEGANS:176401_S_AT
tcctaccacatttgaaagatccgaaccaacaatgggtactgaggcaacaacagatcctgt
ttttccggacaaaaccacaaatttcgccacagtttctgaacattcaagatcgtcaacacc
aaattatattactgaacatcccaccacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTACCACATTTGAAAGATCCGAA 368 585 924 Antisense
AGATCCGAACCAACAATGGGTACTG 457 65 940 Antisense
AACAATGGGTACTGAGGCAACAACA 706 125 951 Antisense
GGTACTGAGGCAACAACAGATCCTG 415 503 958 Antisense
CAACAGATCCTGTTTTTCCGGACAA 141 189 971 Antisense
AACCACAAATTTCGCCACAGTTTCT 569 147 996 Antisense
ACAAATTTCGCCACAGTTTCTGAAC 363 111 1000 Antisense
CAGTTTCTGAACATTCAAGATCGTC 47 207 1013 Antisense
GAACATTCAAGATCGTCAACACCAA 215 351 1021 Antisense
GATCGTCAACACCAAATTATATTAC 131 419 1031 Antisense
TATATTACTGAACATCCCACCACAT 292 661 1048 Antisense
Sequence Source Affymetrix Proprietary Database