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[176399_at]

Description Y38F2AR.J /REP_DB=WormBase Gene ID /WP=CE26517 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 02      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 2.7
(-3)
A 		51.9
(3)
A 		27.7
(0)
A 		5.9
(-2.6)
A 		49
B 5.9
(0)
A 		3.7
(-3)
A 		4.7
(-1.6)
A 		8.1
(3)
A 		4
C 2.4
(-3)
A 		17.9
(3)
A 		2.3
(-3)
A 		10.2
(0)
A 		16
avr 3.7
(-3) 		24.5
(3) 		11.6
(-0.7) 		8.1
(-1.7) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 7.7
(3)
A 		2.7
(-2.5)
A 		2.2
(-3)
A 		5
(0.1)
A 		2.2
(-3)
A 		7.3
(2.6)
A 		6
B 16.6
(3)
A 		13.5
(1.7)
A 		3.3
(-2.6)
A 		5.5
(-1.7)
A 		2.3
(-3)
A 		2.9
(-2.7)
A 		14
C 9.9
(-2)
A 		37.9
(3)
A 		7.6
(-2.4)
A 		6.4
(-2.6)
A 		14.4
(-1.2)
A 		4.3
(-3)
A 		34
avr 11.4
(0.1) 		18
(3) 		4.4
(-3) 		5.6
(-2.5) 		6.3
(-2.2) 		4.8
(-2.8) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1
(-2.9)
A 		11.3
(3)
A 		7.2
(0.6)
A 		0.9
(-3)
A 		10
B 1.9
(3)
A 		0.9
(-3)
A 		1.1
(-1.8)
A 		1.7
(1.8)
A 		1
C 0.8
(-3)
A 		5.1
(3)
A 		0.8
(-3)
A 		1.7
(-1.7)
A 		4
avr 1.2
(-3) 		5.8
(3) 		3
(-0.7) 		1.4
(-2.7) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.4
(1.2)
A 		1
(-0.7)
A 		0.5
(-3)
A 		1.3
(0.7)
A 		0.7
(-2.1)
A 		1.8
(3)
A 		1
B 5.8
(3)
A 		4.5
(1.4)
A 		0.8
(-3)
A 		1.4
(-2.3)
A 		0.9
(-2.9)
A 		1.1
(-2.6)
A 		5
C 3.7
(-1.6)
A 		11.6
(3)
A 		1.9
(-2.7)
A 		1.3
(-3)
A 		4.7
(-1)
A 		1.4
(-2.9)
A 		10
avr 3.6
(0.3) 		5.7
(3) 		1.1
(-3) 		1.3
(-2.7) 		2.1
(-1.7) 		1.4
(-2.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176399_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19352
Sequence Type Exemplar sequence
Representative Public ID Y38F2AR.J NCBI
Target Description Y38F2AR.J /REP_DB=WormBase Gene ID /WP=CE26517 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067793
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000033681 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2349270:2367054:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067793 5/11 Cross Hyb Matching Probes None
SNAP00000033662 5/11 Cross Hyb Matching Probes None
GENEFINDER00000014624 5/11 Cross Hyb Matching Probes None
SNAP00000014621 5/11 Cross Hyb Matching Probes None
Y38F2AR.5 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2361357-2364144(+) 45.96 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE70297 Hypothetical protein CBG16818 [Caenorhabditis briggsae] 1.0E-172
blast NP_500193 Y38F2AR.6 [Caenorhabditis elegans] gb|AAK68447.1| Hypothetical protein Y38F2AR.6 [Caenorhabditis elegans] 1.0E-127
blast NP_500194 Y38F2AR.5 [Caenorhabditis elegans] gb|AAU87815.1| Hypothetical protein Y38F2AR.5 [Caenorhabditis elegans] 3.0E-48
Sequence
Target Sequence 
>C. ELEGANS:176399_AT
tctccatatcgttttatgccaccacaaccacaatatgatggagttgatcggggatggttt
atgacattggatctacttgccgcgttgccgctatcggtttttgtgctcaccaattatgtg
ccaaatactattgatcaaaaaaattgggtttttaccccagaattgcaagaattctctgga
aaaaaaaccaaaaataatacagtagtaaattccgtagaaatctttaaaggtggagtagag
tttccccaattgttggtttttatttttttgataatcttcaaatttttacatatgaaaatc
ccgaattttgtgcaaaaaatcagtttttcagtaaaaaaaaacgaattttcacggagtttc
actagaaatgtttcgaattttccgtcaaattctcagattttagaacaatttttaacggaa
aaatcccgaatttttagtcaaaatcactgcaactttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCATATCGTTTTATGCCACCAC 199 611 151 Antisense
ATGGAGTTGATCGGGGATGGTTTAT 237 51 188 Antisense
GATGGTTTATGACATTGGATCTACT 68 409 203 Antisense
GTTGCCGCTATCGGTTTTTGTGCTC 40 441 234 Antisense
TTTGTGCTCACCAATTATGTGCCAA 186 667 250 Antisense
TTATGTGCCAAATACTATTGATCAA 66 679 264 Antisense
GTTTTTACCCCAGAATTGCAAGAAT 184 321 298 Antisense
GAGTAGAGTTTCCCCAATTGTTGGT 562 397 383 Antisense
GATAATCTTCAAATTTTTACATATG 43 423 420 Antisense
GAATTTTCACGGAGTTTCACTAGAA 700 323 493 Antisense
TTTAGTCAAAATCACTGCAACTTTT 111 569 583 Antisense
Sequence Source Affymetrix Proprietary Database