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[176397_at]

Description Y71F9AR.C /REP_DB=WormBase Gene ID /WP=CE22862 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 18      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 60      6grp_total > 05      4grp_total > 54      6grp_highest_sub > De      6grp_cgc > 12      6grp_cgc_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 560
1 2 3 4 range
A 672.4
(3)
P 		435.9
(-0.5)
P 		331.5
(-2.1)
P 		271.1
(-3)
P 		401
B 739.1
(3)
P 		413.9
(-0.5)
P 		278.1
(-1.9)
P 		179.6
(-3)
P 		560
C 708.9
(3)
P 		404.2
(-0.6)
P 		341.3
(-1.4)
P 		202.4
(-3)
P 		507
avr 706.8
(3) 		418
(-0.5) 		317
(-1.8) 		217.7
(-3) 		489

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 399
1 2 3 4 5 6 range
A 515.6
(3)
P 		498.9
(2.5)
P 		307.9
(-2.7)
P 		410.4
(0.1)
P 		295.5
(-3)
P 		353.1
(-1.4)
P 		220
B 625.1
(3)
P 		414.8
(-0.3)
P 		320.1
(-1.8)
P 		303
(-2.1)
P 		408
(-0.4)
P 		247.4
(-3)
P 		378
C 470.5
(3)
P 		358
(0.2)
P 		312.9
(-0.9)
P 		269.5
(-1.9)
P 		317.6
(-0.8)
P 		225.9
(-3)
P 		245
avr 537.1
(3) 		423.9
(0.4) 		313.6
(-2.1) 		327.6
(-1.8) 		340.4
(-1.5) 		275.5
(-3) 		262
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 244.8
(3)
P 		94.6
(-1.4)
P 		86.7
(-1.6)
P 		39.7
(-3)
P 		205
B 235.7
(3)
P 		102.2
(-1.1)
P 		64.4
(-2.2)
P 		38.3
(-3)
P 		197
C 234.7
(3)
P 		116.2
(-0.5)
P 		119
(-0.5)
P 		34.1
(-3)
P 		201
avr 238.4
(3) 		104.3
(-1) 		90
(-1.4) 		37.4
(-3) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 95.1
(-1.5)
P 		177.4
(3)
P 		67.1
(-3)
P 		104.1
(-1)
P 		89.2
(-1.8)
P 		86
(-2)
P 		110
B 217.5
(3)
P 		138.1
(-0.4)
P 		77.7
(-3)
P 		80.2
(-2.9)
P 		165.8
(0.8)
P 		92.3
(-2.4)
P 		140
C 174.4
(3)
P 		109.2
(-0.3)
P 		79.6
(-1.7)
P 		54.2
(-3)
P 		102.8
(-0.6)
P 		75.6
(-1.9)
P 		120
avr 162.3
(3) 		141.6
(1.6) 		74.8
(-3) 		79.5
(-2.7) 		119.3
(0.1) 		84.6
(-2.3) 		88
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176397_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18686
Sequence Type Exemplar sequence
Representative Public ID Y71F9AR.C NCBI
Target Description Y71F9AR.C /REP_DB=WormBase Gene ID /WP=CE22862 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026638(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026638 NCBI Caenorhabditis elegans Branching AbnorMal family member (bam-2) (bam-2) mRNA, complete cds. 11/11 None
SNAP00000022195 ENSEMBL cdna:SNAP chromosome:CEL140:I:2945825:2953953:-1 11/11 None
GENEFINDER00000022202 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2949976:2959529:-1 11/11 None
Y71F9AR.1 ENSEMBL cdna:known chromosome:CEL140:I:2949610:2957877:-1 gene:Y71F9AR.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2950189-2957868(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol bam-2
Ensembl Y71F9AR.1
Entrez Gene 171868 Entrez gene
SwissProt Q86S63 EMBL-EBI
WormBase CE33243 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO21419 Branching abnormal protein 2 [Caenorhabditis elegans] ref|NP_001021809.1| Branching AbnorMal family member (bam-2) [Caenorhabditis elegans] gb|AAQ76550.1| BAM-2 [Caenorhabditis elegans] 0.0
blast CAE60577 Hypothetical protein CBG04211 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021809.1 1 870-892
Y71F9AR.1 1 870-892
SNAP00000022195 1 534-556
GENEFINDER00000022202 1 963-985
Sequence
Target Sequence 
>C. ELEGANS:176397_AT
ttcgcgatcagtcatccgtcaaatgtgattcatcaagttgatcttcactcccagcttctt
ccatatcaaatccgggctccagatctatcgaaaactggaattctcgatgattctctttgg
gaaaaacctgcctacgtcaccgattctgaagcggcgccggttttggaatcatcgccgcac
ggggaagttgtcgatttcaccgccgatattattgagccggagcaattgttatctggacga
tggattctgtattccctcttcctaaccatcctcctatgcctcttcatcctaatgtgtatc
gtatgttactggtgtgtgctgcgaccacgtgctatgcgtcgtaccgacactggatcccaa
cgaacaatcattcgtgacagtccagactatgctcctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGCGATCAGTCATCCGTCAAATG 404 695 2350 Antisense
TCATCAAGTTGATCTTCACTCCCAG 145 619 2379 Antisense
TTCCATATCAAATCCGGGCTCCAGA 689 699 2408 Antisense
ACGTCACCGATTCTGAAGCGGCGCC 307 91 2483 Antisense
GCGCCGGTTTTGGAATCATCGCCGC 450 287 2503 Antisense
TTGTCGATTTCACCGCCGATATTAT 39 699 2537 Antisense
GACGATGGATTCTGTATTCCCTCTT 441 379 2585 Antisense
CTATGCCTCTTCATCCTAATGTGTA 325 225 2623 Antisense
TTACTGGTGTGTGCTGCGACCACGT 459 683 2655 Antisense
ACGTGCTATGCGTCGTACCGACACT 562 93 2676 Antisense
GTGACAGTCCAGACTATGCTCCTGT 478 481 2723 Antisense
Sequence Source Affymetrix Proprietary Database