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[176396_s_at]

Description Y105E8B.GG /REP_DB=WormBase Gene ID /WP=CE24091 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 05      4grp_highest_8_8 > 58      4grp_high_8_8 > 34      6grp_highest_nonorm > 12      6grp_total > 15      4grp_total > 46      6grp_highest_sub > De      6grp_cgc > 31      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2069
1 2 3 4 range
A 3150.7
(3)
P 		2342.1
(0.4)
P 		1288.2
(-3)
P 		1890.3
(-1.1)
P 		1863
B 3357.4
(3)
P 		1792.4
(-2.3)
P 		1596.2
(-3)
P 		1891.7
(-2)
P 		1761
C 3100.6
(3)
P 		2293.7
(0.1)
P 		1485.2
(-2.7)
P 		1405.5
(-3)
P 		1695
avr 3202.9
(3) 		2142.7
(-0.6) 		1456.5
(-3) 		1729.2
(-2.1) 		1746

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3848
1 2 3 4 5 6 range
A 2359.8
(1.6)
P 		2972.3
(3)
P 		1527.8
(-0.3)
P 		1162.7
(-1.2)
P 		923.7
(-1.7)
P 		359.5
(-3)
P 		2613
B 3178.6
(3)
P 		2382
(1.3)
P 		1754.5
(-0)
P 		1013.6
(-1.6)
P 		1232.7
(-1.1)
P 		352.1
(-3)
P 		2827
C 4080.2
(3)
P 		2103.1
(-0.1)
P 		1857.4
(-0.5)
P 		1013.2
(-1.8)
P 		1469.2
(-1.1)
P 		232.3
(-3)
P 		3848
avr 3206.2
(3) 		2485.8
(1.5) 		1713.2
(-0.1) 		1063.2
(-1.4) 		1208.5
(-1.1) 		314.6
(-3) 		2892
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 910
1 2 3 4 range
A 1147.2
(3)
P 		508.4
(-1.4)
P 		336.8
(-2.6)
P 		276.7
(-3)
P 		871
B 1070.6
(3)
P 		442.7
(-2.4)
P 		369.9
(-3)
P 		403.1
(-2.7)
P 		701
C 1026.4
(3)
P 		659.5
(0.2)
P 		517.6
(-0.9)
P 		237
(-3)
P 		789
avr 1081.4
(3) 		536.9
(-1.2) 		408.1
(-2.2) 		305.6
(-3) 		776

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1435
1 2 3 4 5 6 range
A 435
(-0.8)
P 		1057.1
(3)
P 		332.7
(-1.5)
P 		294.9
(-1.7)
P 		278.7
(-1.8)
P 		87.5
(-3)
P 		970
B 1106
(3)
P 		792.9
(1.1)
P 		426
(-1.2)
P 		268.5
(-2.2)
P 		500.8
(-0.7)
P 		131.3
(-3)
P 		975
C 1512.4
(3)
P 		641.7
(-0.6)
P 		472.7
(-1.3)
P 		203.7
(-2.5)
P 		475.4
(-1.3)
P 		77.8
(-3)
P 		1435
avr 1017.8
(3) 		830.6
(1.8) 		410.5
(-1) 		255.7
(-2) 		418.3
(-0.9) 		98.9
(-3) 		919
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176396_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18795
Sequence Type Exemplar sequence
Representative Public ID Y105E8B.GG NCBI
Target Description Y105E8B.GG /REP_DB=WormBase Gene ID /WP=CE24091 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026528(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026528 NCBI Caenorhabditis elegans LEVamisole resistant family member (lev-11) (lev-11) mRNA, complete cds. 11/11 None
GENEFINDER00000011752 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14629633:14633552:-1 11/11 None
SNAP00000011730 ENSEMBL cdna:SNAP chromosome:CEL140:I:14630548:14633552:-1 11/11 None
Y105E8B.1e.2 ENSEMBL cdna:known chromosome:CEL140:I:14629059:14633555:-1 gene:Y105E8B.1 11/11 A 
Y105E8B.1e.3 ENSEMBL cdna:known chromosome:CEL140:I:14629059:14633553:-1 gene:Y105E8B.1 11/11 A 
Y105E8B.1e.1 ENSEMBL cdna:known chromosome:CEL140:I:14629059:14633555:-1 gene:Y105E8B.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173319 6 1 NM_001026524 172001_x_at (11), 194257_x_at (11)
NM_001026525 172001_x_at (11), 175734_s_at (11), 194257_x_at (11)
NM_001026526 172001_x_at (11), 175734_s_at (11), 194257_x_at (11)
NM_001026528 171997_x_at (11), 172001_x_at (11), 175734_s_at (11), 176396_s_at (11), 194257_x_at (11)
NM_001026529 172001_x_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14629563-14633483(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y105E8B.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD45604 Hypothetical protein Y105E8B.1e [Caenorhabditis elegans] ref|NP_001021699.1| LEVamisole resistant family member (lev-11) [Caenorhabditis elegans] dbj|BAA07542.1| CeTMIII [Caenorhabditis elegans] sp|Q27249|TPM3_CAEEL Tropomyosin isoform 3 dbj|BAA07545.1| CeTMIII [Caenorhabditis elegans] 6.0E-78
blast CAE72603 Hypothetical protein CBG19793 [Caenorhabditis briggsae] 2.0E-77
blast CAC70114 Hypothetical protein Y105E8B.1a [Caenorhabditis elegans] ref|NP_001021695.1| LEVamisole resistant family member (lev-11) [Caenorhabditis elegans] sp|Q22866|TPM1_CAEEL Tropomyosin isoforms 1/2 dbj|BAA07543.1| CeTMI [Caenorhabditis elegans] 3.0E-73
blast BAA07540.1 CeTMI [Caenorhabditis elegans] 3.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR000533 EMBL-EBI Tropomyosin 1.6E-121
Pfam IPR000533 EMBL-EBI Tropomyosin 2.9E-49
Pfam IPR000533 EMBL-EBI Tropomyosin 9.8E-100
Pfam IPR000533 EMBL-EBI Tropomyosin 2.3E-25
Pfam IPR000533 EMBL-EBI Tropomyosin 1.0E-40
Pfam IPR000533 EMBL-EBI Tropomyosin 4.9E-59
Pfam IPR000533 EMBL-EBI Tropomyosin 3.0E-18
Sequence
Target Sequence 
>C. ELEGANS:176396_S_AT
cgcgcgcaagtcgatggaaacccgctcccaacaggacgaggaacgtgccaacttcctcga
gactcaagtcgacgaggctaaggttatcgccgaggatgctgatcgcaaatacgaagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCGCGCAAGTCGATGGAAACCCGC 63 245 303 Antisense
GCGCAAGTCGATGGAAACCCGCTCC 434 287 306 Antisense
ACAGGACGAGGAACGTGCCAACTTC 541 101 333 Antisense
GAGGAACGTGCCAACTTCCTCGAGA 293 405 340 Antisense
CCAACTTCCTCGAGACTCAAGTCGA 288 275 350 Antisense
CTTCCTCGAGACTCAAGTCGACGAG 611 219 354 Antisense
GAGACTCAAGTCGACGAGGCTAAGG 443 393 361 Antisense
GACGAGGCTAAGGTTATCGCCGAGG 160 379 373 Antisense
GGTTATCGCCGAGGATGCTGATCGC 173 505 384 Antisense
ATCGCCGAGGATGCTGATCGCAAAT 521 37 388 Antisense
GGATGCTGATCGCAAATACGAAGAG 693 513 396 Antisense
Sequence Source Affymetrix Proprietary Database