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[176395_at]

Description Y71G12B.Q /REP_DB=WormBase Gene ID /WP=CE26257 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 0      4grp_total > 48      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 41.4
(-3)
A 		80.5
(2.4)
A 		85
(3)
A 		52
(-1.5)
A 		44
B 66.2
(-1.2)
A 		54
(-3)
A 		83.4
(1.3)
A 		95.4
(3)
A 		41
C 17
(-2.4)
A 		89.6
(2.3)
A 		100
(3)
A 		8
(-3)
A 		92
avr 41.5
(-3) 		74.7
(1.2) 		89.5
(3) 		51.8
(-1.7) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 17.7
(-2.2)
A 		68.4
(3)
A 		37.6
(-0.2)
A 		15.4
(-2.4)
A 		14.2
(-2.5)
A 		9.8
(-3)
A 		59
B 6.3
(-3)
A 		37.6
(1.2)
A 		6.6
(-3)
A 		20.8
(-1.1)
A 		14.1
(-2)
A 		51.2
(3)
A 		45
C 20.3
(-2.2)
A 		104.7
(3)
A 		10.3
(-2.8)
A 		7.5
(-3)
A 		13.2
(-2.6)
A 		34.4
(-1.3)
A 		97
avr 14.8
(-2.9) 		70.2
(3) 		18.2
(-2.5) 		14.6
(-2.9) 		13.8
(-3) 		31.8
(-1.1) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 15.1
(0.1)
A 		17.5
(1.1)
A 		22.2
(3)
A 		7.6
(-3)
A 		15
B 21.1
(3)
A 		13.3
(-3)
A 		19.3
(1.6)
A 		20.3
(2.4)
A 		8
C 5.6
(-2.2)
A 		25.8
(1.4)
A 		34.9
(3)
A 		1.3
(-3)
A 		34
avr 13.9
(-1.4) 		18.9
(0.5) 		25.5
(3) 		9.7
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 3.3
(-2.8)
A 		24.3
(3)
A 		8.2
(-1.4)
A 		3.9
(-2.6)
A 		4.3
(-2.5)
A 		2.4
(-3)
A 		22
B 2.2
(-2.8)
A 		12.5
(0.7)
A 		1.6
(-3)
A 		5.5
(-1.7)
A 		5.7
(-1.6)
A 		19.1
(3)
A 		18
C 7.5
(-1.8)
A 		31.9
(3)
A 		2.6
(-2.8)
A 		1.5
(-3)
A 		4.3
(-2.4)
A 		11.5
(-1)
A 		30
avr 4.3
(-2.8) 		22.9
(3) 		4.1
(-2.8) 		3.6
(-3) 		4.8
(-2.6) 		11
(-0.7) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176395_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18723
Sequence Type Exemplar sequence
Representative Public ID Y71G12B.Q NCBI
Target Description Y71G12B.Q /REP_DB=WormBase Gene ID /WP=CE26257 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058475(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058475 NCBI Caenorhabditis elegans Y71G12B.18 (Y71G12B.18) mRNA, complete cds. 11/11 None
GENEFINDER00000001830 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1652917:1655334:1 11/11 None
SNAP00000001773 ENSEMBL cdna:SNAP chromosome:CEL140:I:1654757:1655334:1 10/11 None
Y71G12B.18 ENSEMBL cdna:known chromosome:CEL140:I:1651385:1655337:1 gene:Y71G12B.18 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1651384-1655334(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71G12B.18
Entrez Gene 171729 Entrez gene
SwissProt Q95XP3 EMBL-EBI
WormBase CE26257 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK73917 Hypothetical protein Y71G12B.18 [Caenorhabditis elegans] ref|NP_490876.1| Y71G12B.18 [Caenorhabditis elegans] 0.0
blast CAE74478 Hypothetical protein CBG22229 [Caenorhabditis briggsae] 1.0E-135
blast CAE74478 Hypothetical protein CBG22229 [Caenorhabditis briggsae] 1.0E-133
blast AAK73917 Hypothetical protein Y71G12B.18 [Caenorhabditis elegans] ref|NP_490876.1| Y71G12B.18 [Caenorhabditis elegans] 1.0E-99
blast CAE74478 Hypothetical protein CBG22229 [Caenorhabditis briggsae] 9.0E-87
blast CAE74542 Hypothetical protein CBG22299 [Caenorhabditis briggsae] 7.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 7.5E-40
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 1.1E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000001830 1 9-31
Sequence
Target Sequence 
>C. ELEGANS:176395_AT
gatgcagagctcctttacaaacagaaaatgaacgacatcggccgtaacctgacattttac
ggagccgatcctatcaccgatgtcaacgcggatctctattcccgaatcggaaagtacttc
ccgtttgccgtcggaggggatgctgggtactcaactgcaagtgtgtatgtaaatggaaca
tacaaaaatcaagatgtcgtccacgtcgatttgatctactttttcgatcgtattttgaag
attaagacctacgacaacatttggctggacgctgagggagccgagtacccattatttgac
atttttcagtctaccggaagacttgacaggaaggggatcaaattctgtcaaatgagctta
gaagtgcacagtccatcagagcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCAGAGCTCCTTTACAAACAGA 408 413 472 Antisense
CATCGGCCGTAACCTGACATTTTAC 528 211 507 Antisense
TTTACGGAGCCGATCCTATCACCGA 450 663 527 Antisense
TCAACGCGGATCTCTATTCCCGAAT 14 631 554 Antisense
TTCCCGTTTGCCGTCGGAGGGGATG 218 679 589 Antisense
GAGGGGATGCTGGGTACTCAACTGC 80 401 605 Antisense
GTCGTCCACGTCGATTTGATCTACT 129 473 667 Antisense
GACCTACGACAACATTTGGCTGGAC 236 383 717 Antisense
GCTGGACGCTGAGGGAGCCGAGTAC 189 295 735 Antisense
GAGCCGAGTACCCATTATTTGACAT 668 385 749 Antisense
AGAAGTGCACAGTCCATCAGAGCCT 200 75 831 Antisense
Sequence Source Affymetrix Proprietary Database