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[176394_at]

Description Y38F2AR.C /REP_DB=WormBase Gene ID /WP=CE21628 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 68      4grp_total > 24      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 2.7
(-3)
A 		3.7
(-2.9)
A 		44.7
(2.1)
A 		52.3
(3)
A 		50
B 1.4
(-3)
A 		21.6
(3)
A 		14.7
(1)
A 		2.8
(-2.6)
A 		20
C 4.6
(-3)
A 		25.8
(1.7)
A 		10.6
(-1.7)
A 		31.5
(3)
A 		27
avr 2.9
(-3) 		17
(0.3) 		23.3
(1.7) 		28.9
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 42.8
(3)
A 		4.4
(-2.8)
A 		33.7
(1.6)
P 		11.6
(-1.7)
A 		3
(-3)
A 		34.2
(1.7)
A 		40
B 1.8
(-3)
A 		3.7
(-2.7)
A 		20.6
(-0.3)
A 		22.9
(0.1)
A 		24.6
(0.3)
A 		43
(3)
A 		41
C 17
(-0.5)
A 		1.4
(-3)
A 		3.9
(-2.6)
A 		4.9
(-2.4)
A 		26.7
(1)
P 		38.9
(3)
P 		38
avr 20.5
(-0.1) 		3.2
(-3) 		19.4
(-0.3) 		13.1
(-1.3) 		18.1
(-0.5) 		38.7
(3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1
(-2.9)
A 		0.8
(-3)
A 		11.7
(3)
A 		7.7
(0.8)
A 		11
B 0.4
(-3)
A 		5.3
(3)
A 		3.4
(0.7)
A 		0.6
(-2.8)
A 		5
C 1.5
(-3)
A 		7.4
(3)
A 		3.7
(-0.8)
A 		5.3
(0.9)
A 		6
avr 1
(-3) 		4.5
(1) 		6.3
(3) 		4.5
(1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 7.9
(2.7)
A 		1.6
(-2.4)
A 		7.3
(2.2)
P 		3
(-1.3)
A 		0.9
(-3)
A 		8.3
(3)
A 		7
B 0.6
(-3)
A 		1.2
(-2.8)
A 		5
(-1.3)
A 		6.1
(-0.9)
A 		10
(0.7)
A 		16
(3)
A 		15
C 6.3
(-0.2)
A 		0.4
(-3)
A 		1
(-2.7)
A 		1
(-2.7)
A 		8.6
(0.9)
P 		13
(3)
P 		13
avr 4.9
(-1) 		1.1
(-3) 		4.4
(-1.2) 		3.4
(-1.8) 		6.5
(-0.1) 		12.4
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176394_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19318
Sequence Type Exemplar sequence
Representative Public ID Y38F2AR.C NCBI
Target Description Y38F2AR.C /REP_DB=WormBase Gene ID /WP=CE21628 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067799(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067799 NCBI Caenorhabditis elegans Y38F2AR.10 (Y38F2AR.10) mRNA, complete cds. 10/11 None
GENEFINDER00000033678 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2396255:2399418:-1 10/11 None
Y38F2AR.10 ENSEMBL cdna:known chromosome:CEL140:IV:2396255:2399418:-1 gene:Y38F2AR.10 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033668 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2398786-2399424(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38F2AR.10
Entrez Gene 177030 Entrez gene
SwissProt Q95XR9 EMBL-EBI
WormBase CE29375 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_500200 Y38F2AR.10 [Caenorhabditis elegans] gb|AAK68440.2| Hypothetical protein Y38F2AR.10 [Caenorhabditis elegans] 1.0E-102
blast CAE57660 Hypothetical protein CBG00650 [Caenorhabditis briggsae] 7.0E-41
blast CAA94775 Hypothetical protein F58E6.5 [Caenorhabditis elegans] ref|NP_505516.1| F58E6.5 [Caenorhabditis elegans] 5.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 8.3E-20
Sequence
Target Sequence 
>C. ELEGANS:176394_AT
tgtgcactttaatccgtcggaatcggtaacattcgacgcggaaccacgaaaacaagaaat
tccaatcgaaattcaaaacaatgaatcaatggatcttctggtgaaatttaaatccacacg
gtccgggattttcaacacattgcccacttttgcaattgttaaagccggaaattcgatgaa
atttgagctaatttgcgagggtatcgatagggaaaaagttagcagagacagattctcaat
catagtttccggcatcaaaccaacggtactcgccgccaaacaaatttggaaaaattacaa
gaatcgcgaggaactattgattggaaaaatacacaaaaagatgattttcatcaaattttc
aggaatcaatgagaccgattggtggaataagagtatcttcggtgaaccggagactaaggt
aacaaattcgcggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGCACTTTAATCCGTCGGAATCG 20 555 39 Antisense
CGGTAACATTCGACGCGGAACCACG 634 243 62 Antisense
TGAAATTTAAATCCACACGGTCCGG 310 571 140 Antisense
GGTCCGGGATTTTCAACACATTGCC 41 501 158 Antisense
TTTCAACACATTGCCCACTTTTGCA 401 673 168 Antisense
TTTGAGCTAATTTGCGAGGGTATCG 484 667 220 Antisense
GATTCTCAATCATAGTTTCCGGCAT 83 431 269 Antisense
GCATCAAACCAACGGTACTCGCCGC 593 293 290 Antisense
GGTACTCGCCGCCAAACAAATTTGG 552 493 303 Antisense
ATAAGAGTATCTTCGGTGAACCGGA 88 23 425 Antisense
GAGACTAAGGTAACAAATTCGCGGT 224 391 448 Antisense
Sequence Source Affymetrix Proprietary Database