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[176391_at]

Description Y19D10A.L /REP_DB=WormBase Gene ID /WP=CE21448 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 64      4grp_total > 08      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 7.1
(-2.7)
A 		6.5
(-2.8)
A 		69.7
(3)
A 		3.9
(-3)
A 		66
B 13.7
(-2.4)
A 		17.1
(-1.6)
A 		10.8
(-3)
A 		38.1
(3)
A 		27
C 9.3
(-3)
A 		13.6
(-2.7)
A 		9.8
(-3)
A 		90.6
(3)
A 		81
avr 10
(-3) 		12.4
(-2.6) 		30.1
(0.5) 		44.2
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 10.8
(-0.8)
A 		5
(-3)
A 		21
(3)
A 		6.4
(-2.5)
A 		10.5
(-0.9)
A 		13.7
(0.3)
A 		16
B 11
(-1.8)
A 		8.7
(-2.3)
A 		7.2
(-2.6)
A 		36.2
(3)
A 		7
(-2.6)
A 		5
(-3)
A 		31
C 7.8
(-2.9)
A 		8.4
(-2.8)
A 		42
(2.2)
A 		13.8
(-2)
A 		7
(-3)
A 		47.7
(3)
A 		41
avr 9.9
(-2.1) 		7.4
(-3) 		23.4
(3) 		18.8
(1.3) 		8.2
(-2.7) 		22.1
(2.5) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 2.6
(-2.3)
A 		1.4
(-2.7)
A 		18.2
(3)
A 		0.6
(-3)
A 		18
B 4.4
(-1)
A 		4.2
(-1.2)
A 		2.5
(-3)
A 		8.1
(3)
A 		6
C 3.1
(-3)
A 		3.9
(-2.6)
A 		3.4
(-2.9)
A 		15.3
(3)
A 		12
avr 3.4
(-2.8) 		3.2
(-3) 		8
(3) 		8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2
(-2.2)
A 		1.8
(-2.6)
A 		4.6
(3)
A 		1.6
(-3)
A 		3.2
(0.2)
A 		3.3
(0.4)
A 		3
B 3.8
(-1.5)
A 		2.9
(-2.2)
A 		1.8
(-3)
A 		9.6
(3)
A 		2.8
(-2.2)
A 		1.9
(-2.9)
A 		8
C 2.9
(-2.7)
A 		2.6
(-2.9)
A 		10.7
(0.7)
A 		2.8
(-2.8)
A 		2.3
(-3)
A 		16
(3)
A 		14
avr 2.9
(-2.4) 		2.4
(-3) 		5.7
(1.2) 		4.7
(-0.1) 		2.8
(-2.5) 		7.1
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176391_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19531
Sequence Type Exemplar sequence
Representative Public ID Y19D10A.L NCBI
Target Description Y19D10A.L /REP_DB=WormBase Gene ID /WP=CE21448 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y19D10A.L
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y19D10A.L Y19D10A.L /REP_DB=WormBase Gene ID /WP=CE21448 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071254 9/11 Negative Strand Matching Probes A 
NM_071280 9/11 Negative Strand Matching Probes A 
SNAP00000008428 9/11 Negative Strand Matching Probes None
GENEFINDER00000008434 9/11 Negative Strand Matching Probes None
SNAP00000029969 9/11 Negative Strand Matching Probes None
GENEFINDER00000029979 9/11 Negative Strand Matching Probes None
Y19D10A.12 9/11 Negative Strand Matching Probes A 
C01B4.9 9/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2482520-2483134(+) 86.01 100.0
chrV:2374559-2375173(+) 86.01 100.0
Sequence
Target Sequence 
>C. ELEGANS:176391_AT
gacgcagactacccaactgattggttaagaacagatcacacgcatctcggttccggcgcg
tgcgagttttttcgactcttcccacgccttcagctctggcaaacggatagtcatgacgcc
ggagaaggcgaaaatgatgcccatcacgtagaagctaatgtcgtagttgccagtgatatc
cttgatttgagcggcaatcggcccgccgacgacagcgccgattcccatgaaaaccatcag
gatgccgaacgcgttcgacagcttttcgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGCAGACTACCCAACTGATTGGT 535 371 28 Antisense
GAACAGATCACACGCATCTCGGTTC 550 351 56 Antisense
TTCCGGCGCGTGCGAGTTTTTTCGA 483 685 78 Antisense
ACGCCTTCAGCTCTGGCAAACGGAT 452 91 111 Antisense
GGATAGTCATGACGCCGGAGAAGGC 282 511 132 Antisense
ATGATGCCCATCACGTAGAAGCTAA 626 45 161 Antisense
GTCGTAGTTGCCAGTGATATCCTTG 537 473 187 Antisense
TGATTTGAGCGGCAATCGGCCCGCC 561 563 210 Antisense
CGCCGATTCCCATGAAAACCATCAG 58 257 243 Antisense
AAACCATCAGGATGCCGAACGCGTT 675 119 258 Antisense
CGAACGCGTTCGACAGCTTTTCGAC 252 253 273 Antisense
Sequence Source Affymetrix Proprietary Database