[Home] | [Total List]

[176390_at]

Description F28A10.5 /REP_DB=WormBase Gene ID /WP=CE19410 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 09      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 203
1 2 3 4 range
A 35.7
(-3)
A 		58.9
(-0.5)
A 		91.9
(3)
A 		49.7
(-1.5)
A 		56
B 43
(-0.9)
A 		32.5
(-3)
A 		38.3
(-1.9)
A 		63.1
(3)
A 		31
C 50.4
(-2.1)
A 		48.6
(-2.1)
A 		19.4
(-3)
A 		222.7
(3)
P 		203
avr 43
(-3) 		46.7
(-2.7) 		49.9
(-2.4) 		111.8
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 50
(0.7)
A 		31.2
(-1.9)
A 		66.7
(3)
A 		44.2
(-0.1)
A 		56.8
(1.6)
A 		23.5
(-3)
A 		43
B 46.5
(2)
A 		42.2
(1.5)
A 		8.8
(-2.6)
A 		55
(3)
A 		33
(0.4)
A 		5.1
(-3)
A 		50
C 5.9
(-3)
A 		77.4
(2.6)
A 		83
(3)
A 		46.7
(0.2)
A 		24.3
(-1.6)
A 		11.2
(-2.6)
A 		77
avr 34.1
(0.2) 		50.3
(2.6) 		52.8
(3) 		48.6
(2.4) 		38
(0.8) 		13.3
(-3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 13
(-1)
A 		12.8
(-1)
A 		24
(3)
A 		7.3
(-3)
A 		17
B 13.7
(3)
A 		8
(-3)
A 		8.9
(-2.1)
A 		13.4
(2.7)
A 		6
C 16.7
(-1.1)
A 		14
(-1.6)
A 		6.7
(-3)
A 		37.6
(3)
P 		31
avr 14.5
(-0.8) 		11.6
(-3) 		13.2
(-1.8) 		19.4
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 9.2
(-1.2)
A 		11.1
(-0.2)
A 		14.5
(1.6)
A 		11.2
(-0.1)
A 		17.1
(3)
A 		5.7
(-3)
A 		11
B 16.2
(3)
A 		14
(2.1)
A 		2.1
(-2.9)
A 		14.6
(2.3)
A 		13.4
(1.8)
A 		1.9
(-3)
A 		14
C 2.2
(-3)
A 		23.6
(3)
A 		21.1
(2.3)
A 		9.4
(-1)
A 		7.9
(-1.4)
A 		3.8
(-2.6)
A 		21
avr 9.2
(-0.4) 		16.2
(3) 		12.6
(1.3) 		11.7
(0.8) 		12.8
(1.4) 		3.8
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176390_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4124
Sequence Type Exemplar sequence
Representative Public ID F28A10.5 NCBI
Target Description F28A10.5 /REP_DB=WormBase Gene ID /WP=CE19410 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061432(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061432 NCBI Caenorhabditis elegans F28A10.5 (F28A10.5) mRNA, complete cds. 11/11 None
F28A10.5 ENSEMBL cdna:known chromosome:CEL140:II:849684:850660:-1 gene:F28A10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:849683-850660(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F28A10.5
Entrez Gene 185031 Entrez gene
SwissProt Q95YB1 EMBL-EBI
WormBase CE19410 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK85471 Hypothetical protein F28A10.5 [Caenorhabditis elegans] ref|NP_493833.1| F28A10.5 [Caenorhabditis elegans] 1.0E-155
blast AAB70362 Hypothetical protein K06H6.2 [Caenorhabditis elegans] ref|NP_503254.1| K06H6.2 [Caenorhabditis elegans] 8.0E-86
blast CAB54371 Hypothetical protein Y105C5B.23 [Caenorhabditis elegans] ref|NP_502912.1| Y105C5B.23 [Caenorhabditis elegans] 1.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR007744 EMBL-EBI Protein of unknown function DUF672 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493833.1 1 7-29
F28A10.5 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:176390_AT
gggtgcacgttgatgtcattgggacttaacaatcaaatagaatacgatgaacacatccac
aaagctacagggaagcaatgcatcatacttggagcagatattggagaacaaaacgaaaag
acgaaagagtcatacaagaatatcaatggccaattgttcgtaggaaaaatcccggacaat
ctgcccatctcatcgatgctcgagaagtctggtagaagtgagattgagctgttgaaaatg
gatattgaaaatggagagttcactgctttggagccactgatcaaggactattttgtttgt
cagatcttcattgaaattcatggaaccccgttgaatcactttgaactgctccaaaccatg
gcaaaatacggcttccgtatcttcaacgtggaccctaacccatattgcgaggcatgctgt
gagtacagtctcatcaacgacttttgtatggcacagtttgaagttactccgttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTGCACGTTGATGTCATTGGGAC 708 497 391 Antisense
GGAGAGTTCACTGCTTTGGAGCCAC 257 519 643 Antisense
GGAGCCACTGATCAAGGACTATTTT 138 523 660 Antisense
ATGGAACCCCGTTGAATCACTTTGA 324 51 710 Antisense
ATCACTTTGAACTGCTCCAAACCAT 515 27 725 Antisense
AACCATGGCAAAATACGGCTTCCGT 216 147 744 Antisense
GGCTTCCGTATCTTCAACGTGGACC 99 537 760 Antisense
TGGACCCTAACCCATATTGCGAGGC 675 545 779 Antisense
GGCATGCTGTGAGTACAGTCTCATC 307 537 801 Antisense
GTCTCATCAACGACTTTTGTATGGC 554 469 818 Antisense
GGCACAGTTTGAAGTTACTCCGTTG 505 531 840 Antisense
Sequence Source Affymetrix Proprietary Database