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[176387_at]

Description Y71G12B.F /REP_DB=WormBase Gene ID /WP=CE22895 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 80      4grp_total > 41      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 16.1
(-1.6)
A 		52.2
(3)
A 		39.6
(1.4)
A 		4.9
(-3)
A 		47
B 13.6
(-2.5)
A 		31.1
(-0.9)
A 		72.6
(3)
A 		8.8
(-3)
A 		64
C 33.5
(-3)
A 		55.9
(-0.1)
A 		34.5
(-2.9)
A 		79.7
(3)
A 		46
avr 21.1
(-3) 		46.4
(2.5) 		48.9
(3) 		31.1
(-0.8) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 4.4
(-3)
A 		30.3
(0.7)
A 		28.7
(0.5)
A 		36.5
(1.6)
A 		42
(2.4)
A 		46.3
(3)
A 		42
B 9.3
(-2.6)
A 		9.8
(-2.5)
A 		4.4
(-3)
A 		70.6
(3)
A 		33
(-0.4)
A 		5.2
(-2.9)
A 		66
C 22.1
(-1.1)
A 		35.5
(0.9)
A 		15.1
(-2.1)
A 		49.9
(3)
A 		8.8
(-3)
A 		9.4
(-2.9)
A 		41
avr 11.9
(-3) 		25.2
(-1) 		16.1
(-2.4) 		52.3
(3) 		27.9
(-0.6) 		20.3
(-1.8) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 5.9
(-0.1)
A 		11.3
(3)
A 		10.3
(2.4)
A 		0.7
(-3)
A 		11
B 4.3
(-2)
A 		7.7
(-0.7)
A 		16.8
(3)
A 		1.9
(-3)
A 		15
C 11.1
(-3)
A 		16.1
(3)
A 		12
(-1.9)
A 		13.4
(-0.2)
A 		5
avr 7.1
(-1.6) 		11.7
(2) 		13
(3) 		5.3
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 0.8
(-3)
A 		10.8
(2)
A 		6.3
(-0.2)
A 		9.3
(1.3)
A 		12.7
(3)
A 		11.3
(2.3)
A 		12
B 3.2
(-2.3)
A 		3.3
(-2.3)
A 		1.1
(-3)
A 		18.7
(3)
A 		13.4
(1.2)
A 		1.9
(-2.7)
A 		18
C 8.2
(1)
A 		10.8
(3)
A 		3.9
(-2.2)
A 		10
(2.4)
A 		2.9
(-3)
A 		3.1
(-2.8)
A 		8
avr 4.1
(-2.8) 		8.3
(0) 		3.8
(-3) 		12.7
(3) 		9.7
(1) 		5.4
(-1.9) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176387_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18694
Sequence Type Exemplar sequence
Representative Public ID Y71G12B.F NCBI
Target Description Y71G12B.F /REP_DB=WormBase Gene ID /WP=CE22895 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y71G12B.F
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y71G12B.F Y71G12B.F /REP_DB=WormBase Gene ID /WP=CE22895 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058485 10/11 Negative Strand Matching Probes A 
GENEFINDER00000001829 10/11 Negative Strand Matching Probes None
SNAP00000001789 10/11 Negative Strand Matching Probes None
Y71G12B.11a 10/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1738917-1739400(-) 84.68 100.0
Sequence
Target Sequence 
>C. ELEGANS:176387_AT
gagggaagccaggagtctctgtgttcagaaaagttactcactttttaaaaaacttttttt
gctacgtttatcaattgaaaaacaacttttcggaatttttttaaatcctaagattatcga
ttttcccccaactcaccctaacagcctgcccagcagcctgcaatctccgattcgcctgac
tatcgggatcggctctcacgttacacgcgaccaaaagttgcgccgtcgacgaagacacct
gtttggcagccgagatgagtcgttcctcggtcgtttgtcccttcatcagcgtattcgcgg
cgtcgcacagcttgtgaaccgaggcgacgacgacacgagccgcactgatcaggccttcag
accattgataggtacctgtgccgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGGAAGCCAGGAGTCTCTGTGTT 607 401 66 Antisense
AATCTCCGATTCGCCTGACTATCGG 78 171 227 Antisense
TTCGCCTGACTATCGGGATCGGCTC 567 695 236 Antisense
CTCTCACGTTACACGCGACCAAAAG 651 227 258 Antisense
ACACGCGACCAAAAGTTGCGCCGTC 656 109 268 Antisense
AAAGTTGCGCCGTCGACGAAGACAC 99 123 279 Antisense
GACGAAGACACCTGTTTGGCAGCCG 63 381 293 Antisense
TGGCAGCCGAGATGAGTCGTTCCTC 146 547 309 Antisense
GCTTGTGAACCGAGGCGACGACGAC 562 301 375 Antisense
CTGATCAGGCCTTCAGACCATTGAT 111 239 410 Antisense
ACCATTGATAGGTACCTGTGCCGCC 432 87 426 Antisense
Sequence Source Affymetrix Proprietary Database