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[176386_at]

Description F28A10.2 /REP_DB=WormBase Gene ID /WP=CE19407 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 36      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 21.2
(3)
A 		8.9
(-1.9)
A 		6.2
(-3)
A 		21.3
(3)
A 		15
B 38.5
(1.4)
A 		45.1
(3)
A 		22
(-2.7)
A 		20.7
(-3)
A 		24
C 3.6
(-3)
A 		56.3
(3)
A 		4.7
(-2.9)
A 		17.3
(-1.4)
A 		53
avr 21.1
(-0.7) 		36.8
(3) 		11
(-3) 		19.8
(-1) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 11.2
(-0.7)
A 		24.9
(3)
A 		23.7
(2.7)
A 		2.8
(-3)
A 		11.4
(-0.7)
A 		5.7
(-2.2)
A 		22
B 4.4
(-1.7)
A 		5.5
(-1.2)
A 		1.5
(-3)
A 		5.6
(-1.2)
A 		3.3
(-2.2)
A 		15.2
(3)
A 		14
C 1.5
(-3)
A 		33.1
(2.2)
A 		37.7
(3)
A 		2.9
(-2.8)
A 		31
(1.9)
A 		11.6
(-1.3)
A 		36
avr 5.7
(-2.3) 		21.2
(3) 		21
(2.9) 		3.8
(-3) 		15.2
(0.9) 		10.8
(-0.6) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 7.7
(3)
A 		1.9
(-2.7)
A 		1.6
(-3)
A 		3.1
(-1.5)
A 		6
B 12.3
(3)
A 		11.1
(2.1)
A 		5.1
(-2.5)
A 		4.4
(-3)
A 		8
C 1.2
(-3)
A 		16.2
(3)
A 		1.6
(-2.8)
A 		2.9
(-2.3)
A 		15
avr 7.1
(0.7) 		9.7
(3) 		2.8
(-3) 		3.5
(-2.4) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 2.1
(-2)
A 		8.9
(3)
A 		5.2
(0.3)
A 		0.7
(-3)
A 		3.4
(-1)
A 		1.4
(-2.5)
A 		8
B 1.5
(-1.8)
A 		1.8
(-1.4)
A 		0.4
(-3)
A 		1.5
(-1.8)
A 		1.4
(-1.9)
A 		5.7
(3)
A 		5
C 0.6
(-3)
A 		10.1
(3)
A 		9.6
(2.7)
A 		0.6
(-3)
A 		10
(2.9)
A 		3.9
(-0.9)
A 		10
avr 1.4
(-2.5) 		6.9
(3) 		5.1
(1.2) 		0.9
(-3) 		4.9
(1) 		3.7
(-0.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176386_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4187
Sequence Type Exemplar sequence
Representative Public ID F28A10.2 NCBI
Target Description F28A10.2 /REP_DB=WormBase Gene ID /WP=CE19407 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061424(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061424 NCBI Caenorhabditis elegans F28A10.2 (F28A10.2) mRNA, complete cds. 11/11 None
F28A10.2 ENSEMBL cdna:known chromosome:CEL140:II:827897:830273:1 gene:F28A10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009506 7/11 Cross Hyb Matching Probes None
GENEFINDER00000009525 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:827896-830273(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F28A10.2
Entrez Gene 185028 Entrez gene
SwissProt Q95YB9 EMBL-EBI
WormBase CE19407 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK85468 Hypothetical protein F28A10.2 [Caenorhabditis elegans] ref|NP_493825.1| F28A10.2 [Caenorhabditis elegans] 0.0
blast AAD12817 Hypothetical protein Y39F10A.3 [Caenorhabditis elegans] ref|NP_493807.1| Y39F10A.3 [Caenorhabditis elegans] 2.0E-77
blast CAB05275 Hypothetical protein T07G12.3 [Caenorhabditis elegans] ref|NP_501945.1| T07G12.3 [Caenorhabditis elegans] 3.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR007744 EMBL-EBI Protein of unknown function DUF672 2.6E-24
Pfam IPR007744 EMBL-EBI Protein of unknown function DUF672 1.5E-57
Pfam IPR004245 EMBL-EBI Protein of unknown function DUF229 1.1E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493825.1 1 5-27
F28A10.2 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:176386_AT
ataattcttttgtattcttcctcgcagatcacggaattcgtatgggtagtcatatatcat
ccgaacttggcgcatttgaacgtgataacccgtatttatcaattttgtatcaaccacaat
ccgagtatctgagtcgcgaagtattgcaaattccgaacgagaaaggaaactcgttgattc
gccaacaaccaagttttccaagaacgtgcggcactcttccgattccggtacaatattgca
tttgccaagtggatcagtttaatgttgaagatttggacttgagaaaatatctcggaaata
agcttcttgacgaaagcttcagcttcacgaaaattcacgaaagcctagaaacctctaatt
tcacctcagagtgcgagacatacaagatgctgaaggctacaaatctaattgaatatggct
actctggagagcggaagatgtatagaatttcagtcaagacaacttacccattgttagctc
attttgagacgatgattgtgtttaatgttacaactgacaccattcaagtgggaaaagtgg
tgcggcttgacacttatgggagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAATTCTTTTGTATTCTTCCTCGC 68 27 830 Antisense
TCTTCCTCGCAGATCACGGAATTCG 80 619 845 Antisense
ATATCATCCGAACTTGGCGCATTTG 102 21 883 Antisense
GTATCAACCACAATCCGAGTATCTG 427 453 936 Antisense
GATTCGCCAACAACCAAGTTTTCCA 325 433 1005 Antisense
CCAAGAACGTGCGGCACTCTTCCGA 388 277 1027 Antisense
GCACTCTTCCGATTCCGGTACAATA 368 315 1040 Antisense
AAGCTTCAGCTTCACGAAAATTCAC 246 151 1143 Antisense
GAAACCTCTAATTTCACCTCAGAGT 438 359 1177 Antisense
ACTTACCCATTGTTAGCTCATTTTG 413 103 1291 Antisense
GGTGCGGCTTGACACTTATGGGAGC 579 499 1368 Antisense
Sequence Source Affymetrix Proprietary Database