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[176385_at]

Description Y38F2AR.N /REP_DB=WormBase Gene ID /WP=CE21635 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 97      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 13.1
(-3)
A 		82
(3)
A 		36
(-1)
A 		68.6
(1.8)
A 		69
B 6.3
(-3)
A 		19.3
(-2)
A 		12.6
(-2.5)
A 		81.1
(3)
A 		75
C 14.1
(-3)
A 		19.4
(-2.6)
A 		13.6
(-3)
A 		104.7
(3)
A 		91
avr 11.2
(-3) 		40.2
(-0.6) 		20.7
(-2.2) 		84.8
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 10.6
(-3)
A 		21.8
(-2.6)
A 		26
(-2.5)
A 		71.7
(-0.8)
A 		114.5
(0.7)
A 		180
(3)
P 		169
B 21.8
(-2.3)
A 		41.1
(-1.5)
A 		7.2
(-3)
A 		34.1
(-1.8)
A 		141
(3)
A 		103.3
(1.3)
P 		134
C 34.2
(-1.6)
A 		5.1
(-3)
A 		54.6
(-0.6)
A 		42.7
(-1.2)
A 		89.1
(1.1)
A 		129.4
(3)
P 		124
avr 22.2
(-3) 		22.7
(-3) 		29.3
(-2.6) 		49.5
(-1.6) 		114.9
(1.8) 		137.6
(3) 		115
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 4.8
(-3)
A 		17.8
(3)
A 		9.4
(-0.9)
A 		10
(-0.6)
A 		13
B 2
(-3)
A 		4.8
(-1.9)
A 		2.9
(-2.6)
A 		17.3
(3)
A 		15
C 4.7
(-3)
A 		5.6
(-2.6)
A 		4.7
(-3)
A 		17.7
(3)
A 		13
avr 3.8
(-3) 		9.4
(0) 		5.7
(-2) 		15
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 1.9
(-3)
A 		7.8
(-2.2)
A 		5.7
(-2.5)
A 		18.2
(-0.7)
A 		34.5
(1.7)
A 		43.8
(3)
P 		42
B 7.6
(-2.4)
A 		13.7
(-1.7)
A 		1.8
(-3)
A 		9
(-2.2)
A 		57.3
(3)
A 		38.5
(1)
P 		56
C 12.7
(-1.4)
A 		1.6
(-3)
A 		13.9
(-1.2)
A 		8.6
(-2)
A 		28.8
(0.9)
A 		43.3
(3)
P 		42
avr 7.4
(-2.9) 		7.7
(-2.9) 		7.1
(-3) 		11.9
(-2.2) 		40.2
(2.7) 		41.9
(3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176385_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19210
Sequence Type Exemplar sequence
Representative Public ID Y38F2AR.N NCBI
Target Description Y38F2AR.N /REP_DB=WormBase Gene ID /WP=CE21635 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067798(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067798 NCBI Caenorhabditis elegans Y38F2AR.1 (Y38F2AR.1) mRNA, complete cds. 11/11 None
SNAP00000033667 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2390819:2396036:1 11/11 None
GENEFINDER00000033674 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2390819:2396036:1 11/11 None
Y38F2AR.1 ENSEMBL cdna:known chromosome:CEL140:IV:2390819:2396250:1 gene:Y38F2AR.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2391043-2396042(+) 98.77 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38F2AR.1
Entrez Gene 177029 Entrez gene
SwissProt Q95XS0 EMBL-EBI
WormBase CE21635 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500199 Y38F2AR.1 [Caenorhabditis elegans] gb|AAK68439.1| Hypothetical protein Y38F2AR.1 [Caenorhabditis elegans] 0.0
blast NP_500199 Y38F2AR.1 [Caenorhabditis elegans] gb|AAK68439.1| Hypothetical protein Y38F2AR.1 [Caenorhabditis elegans] 1.0E-174
blast CAE70293 Hypothetical protein CBG16814 [Caenorhabditis briggsae] 1.0E-139
blast CAE70293 Hypothetical protein CBG16814 [Caenorhabditis briggsae] 1.0E-133
blast CAE70293 Hypothetical protein CBG16814 [Caenorhabditis briggsae] 2.0E-83
blast CAA95818 Hypothetical protein F22D6.6 [Caenorhabditis elegans] ref|NP_492009.1| F22D6.6 [Caenorhabditis elegans] 1.0E-32
blast CAE73096 Hypothetical protein CBG20475 [Caenorhabditis briggsae] 5.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR008191 EMBL-EBI Maternal tudor protein 4.9E-8
Pfam IPR008191 EMBL-EBI Maternal tudor protein 5.6E-8
Pfam IPR008191 EMBL-EBI Maternal tudor protein 4.9E-8
Sequence
Target Sequence 
>C. ELEGANS:176385_AT
ctcgaacctcaagaatcagcggccgctagagatggaagaaataaaattcgccctccaaac
cggccgaacctacgtgatggcaaccatcaaaaatcgccaaaaatcgtcggctcaatggct
ccgttgcgagattatcgattttttgccgaacgccaacgtggctcttcgctacgtggatct
gggaacacgtggcatcctgaagctcaaaaatttgcaccgaatgcacattgagcacacaaa
aatcgcgccggcttgcattgaaattggccgatttctcgacgacgatttatcgatggccga
cagcgaaatggagtggaatacacatttttggcgtgaaattgtaccctatgacgtgccgat
cgttgtcggacccgatatggaattcctggaaaccggcaaactgcaattctcgcagattcg
ggtcgccggcgacgaagacgacgaaaatttgctcgataaaatcccgtcgccgtcgccgtt
tttcactgaacgatccgacgatttacgtacccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGAACCTCAAGAATCAGCGGCCG 416 231 825 Antisense
CCGGCCGAACCTACGTGATGGCAAC 84 265 884 Antisense
CTCTTCGCTACGTGGATCTGGGAAC 416 229 986 Antisense
ACACGTGGCATCCTGAAGCTCAAAA 189 111 1009 Antisense
TCGCGCCGGCTTGCATTGAAATTGG 630 595 1067 Antisense
TGGCCGATTTCTCGACGACGATTTA 470 543 1089 Antisense
TACCCTATGACGTGCCGATCGTTGT 412 649 1166 Antisense
TGCAATTCTCGCAGATTCGGGTCGC 420 575 1226 Antisense
TTTGCTCGATAAAATCCCGTCGCCG 325 669 1272 Antisense
GTCGCCGTTTTTCACTGAACGATCC 13 471 1296 Antisense
ACGATCCGACGATTTACGTACCCAG 304 31 1314 Antisense
Sequence Source Affymetrix Proprietary Database