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[176384_at]

Description H05L03.3 /REP_DB=WormBase Gene ID /WP=CE17957 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 65      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 66      6grp_total > 55      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4745
1 2 3 4 range
A 1937.1
(-0.6)
P 		952.5
(-2.5)
P 		695
(-3)
P 		3854.9
(3)
P 		3160
B 2262.4
(0.7)
P 		842.4
(-2.5)
P 		621.2
(-3)
P 		3315.1
(3)
P 		2694
C 2124.3
(-1.1)
P 		810.3
(-2.7)
P 		590
(-3)
P 		5334.9
(3)
P 		4745
avr 2107.9
(-0.5) 		868.4
(-2.6) 		635.4
(-3) 		4168.3
(3) 		3533

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2159
1 2 3 4 5 6 range
A 1781.9
(2.2)
P 		1198
(-1.5)
P 		1904.2
(3)
P 		1434.4
(0)
P 		962.5
(-3)
P 		981.9
(-2.9)
P 		942
B 1281.7
(-1.8)
P 		1403.7
(-1.1)
P 		2148.9
(3)
P 		1400.1
(-1.1)
P 		1054.1
(-3)
P 		1784
(1)
P 		1095
C 1247.2
(-2.2)
P 		1788.1
(-0.7)
P 		1400.7
(-1.7)
P 		1645.3
(-1.1)
P 		946.8
(-3)
P 		3105.7
(3)
P 		2159
avr 1436.9
(-0.2) 		1463.3
(-0.1) 		1817.9
(2.1) 		1493.3
(0.1) 		987.8
(-3) 		1957.2
(3) 		969
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 756
1 2 3 4 range
A 705.3
(3)
P 		206.8
(-2.7)
P 		181.7
(-3)
P 		564.3
(1.4)
P 		524
B 721.5
(3)
P 		208.1
(-2.3)
P 		143.9
(-3)
P 		706.5
(2.8)
P 		578
C 703.2
(1.3)
P 		233
(-2.8)
P 		205.6
(-3)
P 		899.5
(3)
P 		694
avr 710
(2.9) 		216
(-2.6) 		177.1
(-3) 		723.4
(3) 		546

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 801
1 2 3 4 5 6 range
A 328.5
(-0.1)
P 		426.1
(3)
P 		414.7
(2.6)
P 		363.8
(1)
P 		290.4
(-1.4)
P 		239.1
(-3)
P 		187
B 446
(-1.5)
P 		467.2
(-1)
P 		521.8
(0.1)
P 		370.8
(-3)
P 		428.3
(-1.8)
P 		665.2
(3)
P 		294
C 462.3
(-1.7)
P 		545.6
(-1)
P 		356.5
(-2.6)
P 		330.9
(-2.8)
P 		306.4
(-3)
P 		1039.7
(3)
P 		733
avr 412.3
(-1.6) 		479.6
(-0.3) 		431
(-1.3) 		355.2
(-2.7) 		341.7
(-3) 		648
(3) 		306
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176384_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16836
Sequence Type Exemplar sequence
Representative Public ID H05L03.3 NCBI
Target Description H05L03.3 /REP_DB=WormBase Gene ID /WP=CE17957 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076588
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000040794 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5904628:5904935:1 None
SNAP00000040790 ENSEMBL cdna:SNAP chromosome:CEL140:X:5904631:5904939:1 None
H05L03.3.2 ENSEMBL cdna:known chromosome:CEL140:X:5904585:5905304:1 gene:H05L03.3 None
H05L03.3.1 ENSEMBL cdna:known chromosome:CEL140:X:5904611:5905304:1 gene:H05L03.3 None
NM_076588 NCBI Caenorhabditis elegans H05L03.3 (H05L03.3) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5904169-5904939(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H05L03.3
Entrez Gene 180857 Entrez gene
SwissProt Q95YA3 EMBL-EBI
WormBase CE34043 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK85489 Hypothetical protein H05L03.3 [Caenorhabditis elegans] ref|NP_508989.2| H05L03.3 [Caenorhabditis elegans] 2.0E-35
blast CAE68818 Hypothetical protein CBG14775 [Caenorhabditis briggsae] 4.0E-35
blast AAK85489 Hypothetical protein H05L03.3 [Caenorhabditis elegans] ref|NP_508989.2| H05L03.3 [Caenorhabditis elegans] 6.0E-35
blast CAE68818 Hypothetical protein CBG14775 [Caenorhabditis briggsae] 1.0E-34
Sequence
Target Sequence 
>C. ELEGANS:176384_AT
ggctcttataaaaaccgtcgactcgacgcgttttcaactcattcttatcatggttttctg
tgtgttgtctgcattttctcgcaccaaatctgtttccttttccgctccgtcatttttcaa
taaacttccgacttttccggatgaattcgtcagagcaagtaaaatcacatcaaaaatgat
gaagtggctgcttttggctgttttctgcattgctgcctatgcctgggctgatgggactga
ggattcaaatatcgaccaactgatgtcgcgagtataccgaactgtgttgctcaagtctaa
gagaagcccatccatgggactttctctggcagagtacatggcttcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTCTTATAAAAACCGTCGACTCG 313 503 15 Antisense
TCGACGCGTTTTCAACTCATTCTTA 12 603 37 Antisense
CTGTGTGTTGTCTGCATTTTCTCGC 670 239 72 Antisense
CATTTTCTCGCACCAAATCTGTTTC 688 215 86 Antisense
TGAAGTGGCTGCTTTTGGCTGTTTT 158 575 194 Antisense
TGTTTTCTGCATTGCTGCCTATGCC 552 561 213 Antisense
CTATGCCTGGGCTGATGGGACTGAG 432 221 231 Antisense
GACCAACTGATGTCGCGAGTATACC 233 383 268 Antisense
TACCGAACTGTGTTGCTCAAGTCTA 196 649 289 Antisense
GAAGCCCATCCATGGGACTTTCTCT 696 343 317 Antisense
CTCTGGCAGAGTACATGGCTTCACC 62 233 338 Antisense
Sequence Source Affymetrix Proprietary Database