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[176383_at]

Description C52D10.2 /REP_DB=WormBase Gene ID /WP=CE17587 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 40      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 576
1 2 3 4 range
A 150
(-3)
A 		699.4
(2.8)
A 		722.7
(3)
A 		505.9
(0.7)
A 		573
B 201.5
(-3)
A 		534.1
(1)
A 		699.6
(3)
A 		528.6
(0.9)
A 		498
C 164.1
(-3)
A 		620.7
(1.9)
A 		726.3
(3)
A 		533.4
(0.9)
A 		562
avr 171.9
(-3) 		618.1
(1.9) 		716.2
(3) 		522.6
(0.9) 		544

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 659
1 2 3 4 5 6 range
A 335.6
(-3)
A 		531.3
(-1)
A 		753.5
(1.3)
P 		922
(3)
P 		800.4
(1.8)
P 		470.7
(-1.6)
A 		586
B 361
(-3)
A 		419.6
(-2.4)
A 		927
(2.4)
P 		994.9
(3)
P 		936
(2.4)
P 		450.7
(-2.2)
P 		634
C 351.3
(-3)
A 		421.1
(-2.2)
A 		897.9
(2.9)
P 		903.4
(3)
P 		776.7
(1.6)
P 		384.9
(-2.6)
P 		552
avr 349.3
(-3) 		457.3
(-1.9) 		859.5
(2.2) 		940.1
(3) 		837.7
(2) 		435.4
(-2.1) 		591
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 199
1 2 3 4 range
A 54.6
(-3)
A 		151.8
(1.3)
A 		188.9
(3)
A 		74.1
(-2.1)
A 		134
B 64.2
(-3)
A 		131.9
(1.1)
A 		162.1
(3)
A 		112.6
(-0)
A 		98
C 54.3
(-3)
A 		178.4
(0.7)
A 		253.1
(3)
A 		89.9
(-1.9)
A 		199
avr 57.7
(-3) 		154
(1) 		201.4
(3) 		92.2
(-1.6) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 318
1 2 3 4 5 6 range
A 61.9
(-3)
A 		189
(1.2)
A 		164.1
(0.4)
P 		233.8
(2.7)
P 		241.5
(3)
P 		114.6
(-1.2)
A 		180
B 125.6
(-3)
A 		139.7
(-2.7)
A 		225.1
(-0.7)
P 		263.5
(0.2)
P 		380.3
(3)
P 		168
(-2)
P 		255
C 130.2
(-2.9)
A 		128.5
(-3)
A 		228.5
(1.9)
P 		181.7
(-0.4)
P 		251.3
(3)
P 		128.8
(-3)
P 		123
avr 105.9
(-3) 		152.4
(-1.5) 		205.9
(0.2) 		226.3
(0.9) 		291
(3) 		137.1
(-2) 		185
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176383_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9147
Sequence Type Exemplar sequence
Representative Public ID C52D10.2 NCBI
Target Description C52D10.2 /REP_DB=WormBase Gene ID /WP=CE17587 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070648(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070648 NCBI Caenorhabditis elegans C52D10.2 (C52D10.2) mRNA, complete cds. 11/11 None
SNAP00000030649 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17186884:17189603:1 11/11 None
GENEFINDER00000030662 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17186884:17189603:1 11/11 None
C52D10.2 ENSEMBL cdna:known chromosome:CEL140:IV:17186884:17187562:1 gene:C52D10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17186889-17187568(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C52D10.2
Entrez Gene 3565779 Entrez gene
SwissProt Q966N4 EMBL-EBI
WormBase CE17587 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503049 C52D10.2 [Caenorhabditis elegans] gb|AAK77205.1| Hypothetical protein C52D10.2 [Caenorhabditis elegans] 5.0E-81
blast NP_503049 C52D10.2 [Caenorhabditis elegans] gb|AAK77205.1| Hypothetical protein C52D10.2 [Caenorhabditis elegans] 4.0E-70
blast NP_503050 C52D10.1 [Caenorhabditis elegans] gb|AAK77201.1| Hypothetical protein C52D10.1 [Caenorhabditis elegans] 1.0E-51
blast CAE57402 Hypothetical protein CBG00355 [Caenorhabditis briggsae] 3.0E-47
Sequence
Target Sequence 
>C. ELEGANS:176383_AT
gaactctacatcacctaccaagtatactgtgccgcctggaagccatgctacgatatccga
gccagctctgccgaagaggaagaggacaatggtgcatccgtccaactgtgctattatggg
ctcgtggagcaaaacactggagacgactggaaggactgtgacattgtgctttcaacttgc
tcggcgagccttggaggctctccaccgcctctttcaacactttcagcgacacttaacaca
tctagaagcacccgaagacatcacgcatcgtcggctgctagaagaaaggctccactttca
gttccgtcggaggaagacatgggatttggatcttttgactataatgagattgttgatgct
gctgctctgcacagatggcataatggaggagttcgcagtcggagcagtgaggagaacagt
gttagtacgcaggcgctggagagtacggtatccacatgtttttcgattccacgtgctgtc
acaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTCTACATCACCTACCAAGTAT 379 349 34 Antisense
TACCAAGTATACTGTGCCGCCTGGA 344 649 49 Antisense
GCCATGCTACGATATCCGAGCCAGC 632 279 75 Antisense
TGCATCCGTCCAACTGTGCTATTAT 349 577 126 Antisense
GTGACATTGTGCTTTCAACTTGCTC 114 483 191 Antisense
CGCCTCTTTCAACACTTTCAGCGAC 199 257 239 Antisense
TCACGCATCGTCGGCTGCTAGAAGA 288 625 294 Antisense
AGAAAGGCTCCACTTTCAGTTCCGT 50 73 316 Antisense
TGCTGCTGCTCTGCACAGATGGCAT 614 581 390 Antisense
GAGTACGGTATCCACATGTTTTTCG 254 399 474 Antisense
TTTCGATTCCACGTGCTGTCACAAT 328 671 494 Antisense
Sequence Source Affymetrix Proprietary Database