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[176381_s_at]

Description Y40A1A.3 /REP_DB=WormBase Gene ID /WP=CE28521 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 37      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 48.1
(3)
A 		15.8
(-2.4)
A 		12.1
(-3)
A 		36.5
(1.1)
A 		36
B 28.4
(0.8)
A 		40.6
(3)
A 		17.6
(-1.1)
A 		6.9
(-3)
A 		34
C 51.3
(3)
A 		38
(1.2)
A 		7.9
(-3)
A 		47.7
(2.5)
A 		43
avr 42.6
(3) 		31.5
(0.8) 		12.5
(-3) 		30.4
(0.6) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 43.3
(2.2)
A 		49.3
(3)
A 		46.3
(2.6)
A 		45
(2.4)
A 		6.1
(-3)
A 		19.2
(-1.2)
A 		43
B 56.4
(3)
A 		45.8
(-0.3)
A 		51
(1.3)
A 		55.9
(2.8)
A 		39.2
(-2.3)
A 		37.1
(-3)
A 		19
C 48.6
(1.2)
A 		65.4
(3)
M 		64.2
(2.9)
A 		10.8
(-3)
A 		29.7
(-0.9)
A 		41.9
(0.4)
A 		55
avr 49.4
(2.1) 		53.5
(2.9) 		53.8
(3) 		37.2
(-0.5) 		25
(-3) 		32.7
(-1.4) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 17.5
(3)
A 		3.4
(-2.9)
A 		3.2
(-3)
A 		5.3
(-2.1)
A 		14
B 9
(2.3)
A 		10
(3)
A 		4.1
(-1.2)
A 		1.5
(-3)
A 		9
C 17
(3)
A 		10.9
(0.4)
A 		2.8
(-3)
A 		8
(-0.8)
A 		14
avr 14.5
(3) 		8.1
(-0.5) 		3.4
(-3) 		4.9
(-2.2) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 8
(-0.6)
A 		17.5
(3)
A 		10.1
(0.2)
A 		11.4
(0.7)
A 		1.8
(-3)
A 		4.7
(-1.9)
A 		16
B 19.6
(3)
A 		15.3
(-0.6)
A 		12.4
(-3)
A 		14.8
(-1)
A 		15.9
(-0.1)
A 		13.8
(-1.8)
A 		7
C 18
(2.4)
A 		19.9
(3)
M 		16.3
(1.8)
A 		2.2
(-3)
A 		9.6
(-0.5)
A 		14
(1)
A 		18
avr 15.2
(1.3) 		17.6
(3) 		12.9
(-0.3) 		9.5
(-2.7) 		9.1
(-3) 		10.8
(-1.8) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176381_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18274
Sequence Type Exemplar sequence
Representative Public ID Y40A1A.3 NCBI
Target Description Y40A1A.3 /REP_DB=WormBase Gene ID /WP=CE28521 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075968
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y40A1A.3 ENSEMBL cdna:known chromosome:CEL140:X:1995570:1998106:-1 gene:Y40A1A.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075968 6/11 Cross Hyb Matching Probes None
SNAP00000008395 2/11 Cross Hyb Matching Probes None
GENEFINDER00000008400 5/11 Cross Hyb Matching Probes None
SNAP00000008396 6/11 Cross Hyb Matching Probes None
GENEFINDER00000008399 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1995697-1997959(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y40A1A.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAQ91894 Hypothetical protein Y40A1A.3 [Caenorhabditis elegans] ref|NP_508369.3| Y40A1A.3 [Caenorhabditis elegans] 2.0E-45
Sequence
Target Sequence 
>C. ELEGANS:176381_S_AT
tgacgaagagcagcttctcgcactacaagaacgtactccaccacatgggaacttgtcagc
tgctggaattatgagagtacaacgagacgctgctgctaagcgtggagttccgatgcggcc
ggattatggtgttctgaaacaacgcggctacttccaaaagctttcgggacttcttgatcg
tcagtggttcgagaactttgagtggagagatgctccggagctgtttggtcagatgaaaag
ccgagctttagcatttgtgaacagtcgtatcttggcttggggactcgattcacttgttca
ctcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACGAAGAGCAGCTTCTCGCACTA 632 569 90 Antisense
GAACGTACTCCACCACATGGGAACT 413 347 118 Antisense
CATGGGAACTTGTCAGCTGCTGGAA 625 209 133 Antisense
GAGTACAACGAGACGCTGCTGCTAA 554 399 164 Antisense
CTAAGCGTGGAGTTCCGATGCGGCC 186 225 185 Antisense
GATGCGGCCGGATTATGGTGTTCTG 370 413 201 Antisense
GCGGCTACTTCCAAAAGCTTTCGGG 311 285 233 Antisense
GCTTTCGGGACTTCTTGATCGTCAG 9 305 249 Antisense
ATGCTCCGGAGCTGTTTGGTCAGAT 25 43 299 Antisense
GAACAGTCGTATCTTGGCTTGGGGA 56 351 348 Antisense
GACTCGATTCACTTGTTCACTCGAA 87 375 371 Antisense
Sequence Source Affymetrix Proprietary Database