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[176378_at]

Description EGAP798.A /REP_DB=WormBase Gene ID /WP=CE25840 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 34      4grp_total > 51      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 60.7
(-3)
A 		179.1
(3)
A 		132.2
(0.6)
A 		126
(0.3)
A 		118
B 200.6
(2.2)
A 		216.9
(3)
A 		182.6
(1.3)
A 		99
(-3)
A 		118
C 154.9
(-0.8)
A 		210.8
(3)
A 		153.1
(-0.9)
A 		121.4
(-3)
A 		89
avr 138.7
(-1.4) 		202.3
(3) 		156
(-0.2) 		115.5
(-3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 173.6
(3)
A 		159.1
(1.2)
A 		133.7
(-1.9)
A 		139.5
(-1.2)
A 		160.3
(1.4)
A 		124.7
(-3)
A 		49
B 148
(2.8)
A 		136.3
(1.9)
A 		149.6
(2.9)
A 		71.8
(-3)
A 		150.3
(3)
A 		122.7
(0.9)
A 		79
C 106.6
(-2.9)
A 		146.6
(0.9)
A 		169
(3)
A 		128.9
(-0.8)
A 		107.9
(-2.8)
A 		105.7
(-3)
A 		63
avr 142.7
(1.7) 		147.3
(2.4) 		150.8
(3) 		113.4
(-3) 		139.5
(1.2) 		117.7
(-2.3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 22.1
(-1.9)
A 		38.9
(3)
A 		34.6
(1.7)
A 		18.4
(-3)
A 		21
B 64
(3)
A 		53.6
(1.5)
A 		42.3
(-0)
A 		21.1
(-3)
A 		43
C 51.3
(1.6)
A 		60.6
(3)
A 		53.4
(1.9)
A 		20.5
(-3)
A 		40
avr 45.8
(2) 		51
(3) 		43.4
(1.5) 		20
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 32
(-2.4)
A 		56.6
(3)
A 		29.1
(-3)
A 		35.4
(-1.6)
A 		48.4
(1.2)
A 		30.4
(-2.7)
A 		28
B 51.5
(1.6)
A 		45.4
(0.8)
A 		36.3
(-0.5)
A 		19
(-3)
A 		61.1
(3)
A 		45.8
(0.8)
A 		42
C 39.5
(1.3)
A 		44.7
(3)
A 		43
(2.5)
A 		25.9
(-3)
A 		34.9
(-0.1)
A 		35.4
(0)
A 		19
avr 41
(0.9) 		48.9
(3) 		36.1
(-0.5) 		26.8
(-3) 		48.1
(2.8) 		37.2
(-0.2) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176378_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19396
Sequence Type Exemplar sequence
Representative Public ID EGAP798.A NCBI
Target Description EGAP798.A /REP_DB=WormBase Gene ID /WP=CE25840 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072885(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072885 NCBI Caenorhabditis elegans EGAP798.1 (EGAP798.1) mRNA, complete cds. 11/11 None
EGAP798.1 ENSEMBL cdna:known chromosome:CEL140:V:8878622:8879602:1 gene:EGAP798.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015083 2/11 Cross Hyb Matching Probes None
GENEFINDER00000015141 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl EGAP798.1
Entrez Gene 184051 Entrez gene
SwissProt Q9BKZ6 EMBL-EBI
WormBase CE25840 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18923 Hypothetical protein EGAP798.1 [Caenorhabditis elegans] ref|NP_505286.1| EGAP798.1 [Caenorhabditis elegans] 0.0
blast CAB04993 Hypothetical protein ZK228.1 [Caenorhabditis elegans] ref|NP_507612.1| ZK228.1 [Caenorhabditis elegans] 1.0E-103
blast CAB07709 Hypothetical protein ZC15.1 [Caenorhabditis elegans] ref|NP_507916.1| ZC15.1 [Caenorhabditis elegans] 2.0E-44
Sequence
Target Sequence 
>C. ELEGANS:176378_AT
aaacaggtgccctctatgtggttcacacttattgggactcccccttgctgatcaccgtct
tgagaattgcccatttggtatacttgaaggcgaacaacggctggaattcttggccataaa
ccacgtttcctactgccacatgtgcaacagccgctcagccactcatagccaatgcgcaag
accaccatgtcgccaatgtaacatagtcggacacaccgtagcctcaggactatgcgaatc
tcccatgggcaccacgaatcttggacaacaacatctacttcaacaaagggtcaccacctt
tcgtcgaaatcatctgcttcgcatccgtgcactgaccaaccgtcaggacagaccactcca
atatagatcgtacaccgaccaggccttcatctatcttgagagacgagtgcaaaacagacg
aaatgagatgattggatggagcttctaccacgatgacgccggcgaattccctcaacatca
ccctgggagatactccaactacttggaagaacgtccggtccattatctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACAGGTGCCCTCTATGTGGTTCA 257 127 399 Antisense
GTGGTTCACACTTATTGGGACTCCC 498 489 416 Antisense
GATCACCGTCTTGAGAATTGCCCAT 474 421 448 Antisense
TCCTACTGCCACATGTGCAACAGCC 458 591 526 Antisense
GCCACTCATAGCCAATGCGCAAGAC 401 279 556 Antisense
AAGACCACCATGTCGCCAATGTAAC 381 153 576 Antisense
CACACCGTAGCCTCAGGACTATGCG 513 195 610 Antisense
TCCCATGGGCACCACGAATCTTGGA 369 597 639 Antisense
CCAGGCCTTCATCTATCTTGAGAGA 665 271 777 Antisense
TTCCCTCAACATCACCCTGGGAGAT 323 691 865 Antisense
GAAGAACGTCCGGTCCATTATCTAT 505 337 904 Antisense
Sequence Source Affymetrix Proprietary Database