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[176377_at]

Description Y22D7AL.U /REP_DB=WormBase Gene ID /WP=CE26508 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 43      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 15.2
(-3)
A 		93
(1.6)
A 		29.7
(-2.1)
A 		117.2
(3)
A 		102
B 55
(2.4)
A 		60
(3)
A 		11.4
(-3)
A 		31
(-0.6)
A 		49
C 47.5
(3)
A 		19
(-3)
A 		27.6
(-1.2)
A 		43.5
(2.2)
A 		29
avr 39.2
(-0.6) 		57.3
(2) 		22.9
(-3) 		63.9
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 22.4
(-1.2)
A 		4.9
(-3)
A 		12.1
(-2.3)
A 		10.8
(-2.4)
A 		64.5
(3)
A 		16.4
(-1.8)
A 		60
B 41.8
(3)
A 		9.8
(-3)
A 		12.7
(-2.5)
A 		11.1
(-2.8)
A 		15.3
(-2)
A 		11.3
(-2.7)
A 		32
C 7.8
(-3)
A 		47.6
(0.5)
A 		75.7
(3)
A 		27.2
(-1.3)
A 		11.7
(-2.7)
A 		22
(-1.7)
A 		68
avr 24
(-0.3) 		20.8
(-1.5) 		33.5
(3) 		16.4
(-3) 		30.5
(1.9) 		16.6
(-2.9) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 5.5
(-3)
A 		20.2
(3)
A 		7.8
(-2.1)
A 		17.2
(1.8)
A 		15
B 17.5
(3)
A 		14.8
(1.9)
A 		2.6
(-3)
A 		6.6
(-1.4)
A 		15
C 15.7
(3)
A 		5.5
(-3)
A 		9.6
(-0.6)
A 		7.3
(-1.9)
A 		10
avr 12.9
(2.5) 		13.5
(3) 		6.7
(-3) 		10.4
(0.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 4.1
(-2.2)
A 		1.7
(-3)
A 		2.6
(-2.7)
A 		2.7
(-2.7)
A 		19.5
(3)
A 		4
(-2.2)
A 		18
B 14.6
(3)
A 		3.2
(-2.9)
A 		3.1
(-2.9)
A 		3
(-3)
A 		6.2
(-1.3)
A 		4.2
(-2.4)
A 		12
C 2.9
(-3)
A 		14.5
(1.2)
A 		19.3
(3)
A 		5.5
(-2)
A 		3.8
(-2.7)
A 		7.4
(-1.4)
A 		16
avr 7.2
(0.4) 		6.5
(-0.2) 		8.3
(1.5) 		3.7
(-3) 		9.8
(3) 		5.2
(-1.5) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176377_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18977
Sequence Type Exemplar sequence
Representative Public ID Y22D7AL.U NCBI
Target Description Y22D7AL.U /REP_DB=WormBase Gene ID /WP=CE26508 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065031(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065031 NCBI Caenorhabditis elegans Y22D7AL.3 (Y22D7AL.3) mRNA, complete cds. 11/11 None
GENEFINDER00000002276 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1635784:1641724:1 11/11 None
SNAP00000002270 ENSEMBL cdna:SNAP chromosome:CEL140:III:1640254:1642546:1 11/11 None
Y22D7AL.3 ENSEMBL cdna:known chromosome:CEL140:III:1641452:1641724:1 gene:Y22D7AL.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1641451-1641724(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y22D7AL.3
Entrez Gene 189502 Entrez gene
SwissProt Q965P7 EMBL-EBI
WormBase CE26508 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84593 Hypothetical protein Y22D7AL.4 [Caenorhabditis elegans] ref|NP_497430.1| Y22D7AL.4 [Caenorhabditis elegans] 1.0E-117
blast AAK84592 Hypothetical protein Y22D7AL.3 [Caenorhabditis elegans] ref|NP_497432.1| Y22D7AL.3 [Caenorhabditis elegans] 2.0E-32
blast AAK84592 Hypothetical protein Y22D7AL.3 [Caenorhabditis elegans] ref|NP_497432.1| Y22D7AL.3 [Caenorhabditis elegans] 1.0E-31
blast AAK84592 Hypothetical protein Y22D7AL.3 [Caenorhabditis elegans] ref|NP_497432.1| Y22D7AL.3 [Caenorhabditis elegans] 6.0E-31
blast CAE66428 Hypothetical protein CBG11698 [Caenorhabditis briggsae] 2.0E-18
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497432.1 1 43-65
Y22D7AL.3 1 43-65
GENEFINDER00000002276 1 354-376
SNAP00000002270 1 58-80
Sequence
Target Sequence 
>C. ELEGANS:176377_AT
gccaccaaagccgaaaccaatcgtcgtcaacgaccaacctcgcccaccaaccagcaatga
ccacgggggttcttgcttgacatttgccatgtgcatcatgattgccatgttcttcgtgct
catcattctcgtcgccatctacctcaaggatcgggtgatcttcggaccatcaccaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCACCAAAGCCGAAACCAATCGTC 361 279 63 Antisense
AGCCGAAACCAATCGTCGTCAACGA 439 69 71 Antisense
CAATCGTCGTCAACGACCAACCTCG 142 179 80 Antisense
CACCAACCAGCAATGACCACGGGGG 167 203 107 Antisense
AATGACCACGGGGGTTCTTGCTTGA 246 163 118 Antisense
GTTCTTGCTTGACATTTGCCATGTG 201 445 131 Antisense
TTGCCATGTGCATCATGATTGCCAT 478 699 146 Antisense
TCATGATTGCCATGTTCTTCGTGCT 341 623 158 Antisense
TCGCCATCTACCTCAAGGATCGGGT 682 595 194 Antisense
AGGATCGGGTGATCTTCGGACCATC 26 55 209 Antisense
GGTGATCTTCGGACCATCACCAACT 8 501 216 Antisense
Sequence Source Affymetrix Proprietary Database