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[176376_at]

Description Y119D3A.D /REP_DB=WormBase Gene ID /WP=CE26482 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 74      4grp_total > 11      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 0.9
(-3)
A 		32
(0)
A 		7.3
(-2.4)
A 		63.1
(3)
P 		62
B 16.1
(-0.4)
A 		18.7
(0)
A 		1.2
(-3)
A 		35.8
(3)
A 		35
C 31.4
(0.3)
M 		1.7
(-3)
A 		22.5
(-0.7)
A 		55.8
(3)
P 		54
avr 16.1
(-2.2) 		17.5
(-2) 		10.3
(-3) 		51.6
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 28.8
(1.3)
A 		4.3
(-3)
A 		30
(1.5)
A 		38.2
(3)
A 		9.1
(-2.2)
A 		33.5
(2.2)
A 		34
B 3.3
(-2.9)
A 		2.7
(-3)
A 		36.6
(3)
P 		18
(-0.3)
A 		32
(2.2)
P 		21.9
(0.4)
A 		34
C 7.5
(-1.3)
A 		9.6
(-0.6)
A 		14.3
(1.1)
A 		2.7
(-3)
A 		19.8
(3)
A 		18.8
(2.6)
A 		17
avr 13.2
(-0.9) 		5.5
(-3) 		27
(3) 		19.6
(0.9) 		20.3
(1.1) 		24.7
(2.4) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.3
(-3)
A 		6.9
(1.4)
A 		1.9
(-1.9)
A 		9.2
(3)
P 		9
B 5.1
(0.9)
A 		4.6
(0.5)
A 		0.3
(-3)
A 		7.6
(3)
A 		7
C 10.4
(3)
M 		0.5
(-3)
A 		7.8
(1.4)
A 		9.4
(2.4)
P 		10
avr 5.3
(-0.8) 		4
(-2.2) 		3.3
(-3) 		8.7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 5.3
(-0.2)
A 		1.5
(-3)
A 		6.5
(0.7)
A 		9.7
(3)
A 		2.7
(-2.1)
A 		8.2
(1.9)
A 		8
B 1.1
(-2.9)
A 		0.9
(-3)
A 		8.9
(1)
P 		4.8
(-1.1)
A 		13
(3)
P 		8.2
(0.6)
A 		12
C 2.8
(-0.7)
A 		2.9
(-0.6)
A 		3.6
(0.2)
A 		0.5
(-3)
A 		6.4
(3)
A 		6.3
(2.9)
A 		6
avr 3.1
(-1.7) 		1.8
(-3) 		6.3
(1.7) 		5
(0.3) 		7.4
(2.8) 		7.6
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176376_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19025
Sequence Type Exemplar sequence
Representative Public ID Y119D3A.D NCBI
Target Description Y119D3A.D /REP_DB=WormBase Gene ID /WP=CE26482 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064976(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064976 NCBI Caenorhabditis elegans Y119D3A.1 (Y119D3A.1) mRNA, complete cds. 11/11 None
SNAP00000014147 ENSEMBL cdna:SNAP chromosome:CEL140:III:1303704:1305451:1 11/11 None
GENEFINDER00000014150 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1303704:1305451:1 11/11 None
Y119D3A.1 ENSEMBL cdna:known chromosome:CEL140:III:1303704:1305451:1 gene:Y119D3A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1303703-1304482(+) 96.6 100.0
Public Domain and Genome References
Gene Title
Ensembl Y119D3A.1
Entrez Gene 191032 Entrez gene
SwissProt Q966E2 EMBL-EBI
WormBase CE27454 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68404 Hypothetical protein Y119D3A.1 [Caenorhabditis elegans] ref|NP_497377.1| Y119D3A.1 [Caenorhabditis elegans] 1.0E-173
blast CAB03494 Hypothetical protein ZC47.6 [Caenorhabditis elegans] ref|NP_497363.1| ZC47.6 [Caenorhabditis elegans] 4.0E-23
blast CAB03493 Hypothetical protein ZC47.5 [Caenorhabditis elegans] ref|NP_497364.1| ZC47.5 [Caenorhabditis elegans] 2.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.3E-28
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 0.0014
Sequence
Target Sequence 
>C. ELEGANS:176376_AT
tgagagctatcgtttttggccttccaccgttgaagttaaaacttaatctggaaatagatg
ctcgtctaataaagacaatgttcaacaattgtgaagcggagtacgtcaacatctacgatg
aatacacaggtgtttgtagagtgcggtcaaccaaaacattcgagggaaactacttacaaa
cagctctcaatgatataaaaatgatagccaaaaataatgcgacagaattgtatttttcct
cacttgaaaaatcgaacaaattgggcgcaagcctgtacgaagactcggaaaatgccggag
cagaagagatgaatattagttcggggacaatcgagtttaaggacttttaccacaaggaga
ttgccacaattctatcctatttcaaaaaaggagtgtttgaacaaatcatctttcgcggtt
gcaagtccgatggaggcatggagcaaatttacaaactcgagccgtggagaatggcaaaaa
actttttctcagaatgggacgtcgaattgaatggtagtcttttgcatttttttcatttta
ccgggtttataattcacattaacaccatcacagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGAGCTATCGTTTTTGGCCTTCC 272 567 131 Antisense
GAAGCGGAGTACGTCAACATCTACG 653 343 223 Antisense
GGTGTTTGTAGAGTGCGGTCAACCA 570 497 259 Antisense
AAACTACTTACAAACAGCTCTCAAT 516 127 297 Antisense
GACAGAATTGTATTTTTCCTCACTT 268 369 351 Antisense
GCGCAAGCCTGTACGAAGACTCGGA 381 287 395 Antisense
GATTGCCACAATTCTATCCTATTTC 675 433 489 Antisense
GAACAAATCATCTTTCGCGGTTGCA 691 351 529 Antisense
CGCGGTTGCAAGTCCGATGGAGGCA 446 255 544 Antisense
GCAAATTTACAAACTCGAGCCGTGG 668 317 573 Antisense
AATTCACATTAACACCATCACAGAC 161 177 681 Antisense
Sequence Source Affymetrix Proprietary Database