[Home] | [Total List]

[176374_at]

Description Y22D7AL.P /REP_DB=WormBase Gene ID /WP=CE26503 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 13      4grp_total > 44      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 113.1
(-0.3)
P 		167.6
(3)
M 		76.4
(-2.5)
P 		67.3
(-3)
A 		100
B 115.4
(0.1)
A 		146.2
(3)
P 		91.6
(-2.1)
P 		81.6
(-3)
A 		65
C 141.6
(3)
P 		130.3
(1.3)
A 		102.4
(-3)
P 		118.4
(-0.6)
M 		39
avr 123.4
(0.5) 		148
(3) 		90.1
(-2.9) 		89.1
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 186.8
(3)
P 		147.1
(1.2)
P 		143.3
(1)
A 		85.6
(-1.7)
A 		73.8
(-2.3)
A 		57.9
(-3)
A 		129
B 143.8
(0.1)
M 		202.9
(3)
A 		134
(-0.4)
A 		142.8
(0.1)
A 		79.9
(-3)
A 		92.7
(-2.4)
M 		123
C 153.2
(2.8)
P 		156.9
(3)
P 		107.1
(-0)
A 		142.4
(2.1)
A 		58.1
(-3)
A 		79.1
(-1.7)
P 		99
avr 161.3
(2.5) 		169
(3) 		128.1
(0.5) 		123.6
(0.2) 		70.6
(-3) 		76.6
(-2.6) 		98
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 41.2
(3)
P 		36.4
(2.1)
M 		20
(-1.1)
P 		9.9
(-3)
A 		31
B 36.8
(3)
A 		36.1
(2.8)
P 		21.2
(-1.8)
P 		17.4
(-3)
A 		19
C 46.9
(3)
P 		37.5
(0.9)
A 		35.7
(0.5)
P 		20
(-3)
M 		27
avr 41.6
(3) 		36.7
(1.9) 		25.6
(-0.7) 		15.8
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 34.4
(0.2)
P 		52.3
(3)
P 		31.2
(-0.3)
A 		21.7
(-1.8)
A 		22.3
(-1.7)
A 		14.1
(-3)
A 		38
B 50
(0)
M 		67.5
(3)
A 		32.5
(-3)
A 		37.8
(-2.1)
A 		32.5
(-3)
A 		34.6
(-2.6)
M 		35
C 56.8
(3)
P 		47.9
(1.6)
P 		27.2
(-1.7)
A 		28.6
(-1.5)
A 		18.8
(-3)
A 		26.5
(-1.8)
P 		38
avr 47.1
(1.3) 		55.9
(3) 		30.3
(-1.9) 		29.4
(-2.1) 		24.5
(-3) 		25.1
(-2.9) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176374_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19003
Sequence Type Exemplar sequence
Representative Public ID Y22D7AL.P NCBI
Target Description Y22D7AL.P /REP_DB=WormBase Gene ID /WP=CE26503 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065025(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065025 NCBI Caenorhabditis elegans Y22D7AL.6 (Y22D7AL.6) mRNA, complete cds. 11/11 None
Y22D7AL.6 ENSEMBL cdna:known chromosome:CEL140:III:1605736:1606803:1 gene:Y22D7AL.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1605735-1606803(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y22D7AL.6
Entrez Gene 189503 Entrez gene
WormBase CE39041 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84595 Hypothetical protein Y22D7AL.6 [Caenorhabditis elegans] ref|NP_497426.1| Y22D7AL.6 [Caenorhabditis elegans] 1.0E-90
blast CAE66427 Hypothetical protein CBG11697 [Caenorhabditis briggsae] 4.0E-83
Sequence
Target Sequence 
>C. ELEGANS:176374_AT
gtaacctgttcgacacatgttccaccgaatgctgacctggaaaaagatggtcttgacgtg
aagttgccgccgggttggtacagaataggtacaatgacgattcggcacgataagggttgg
ctgaatttgtacaggcgccgggcgattgggcatgggtactgggatttttacacgaatatt
cccgagaggaattgtgcgggtcaagacccaaattatcattattccagaactttcgggctt
cacgccggcgacaatatatctggctcagtggcggtaaagagcaaggagtgcttcgataag
ttgatttatcagatcgaaaaaaagtcaacaatcgaaaaaatcgacgtctatcagtgtcga
aaatgcatattccatagctgctggctggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAACCTGTTCGACACATGTTCCAC 673 461 31 Antisense
TGTTCCACCGAATGCTGACCTGGAA 351 563 48 Antisense
ATGGTCTTGACGTGAAGTTGCCGCC 250 51 77 Antisense
TTGCCGCCGGGTTGGTACAGAATAG 668 685 94 Antisense
GATTCGGCACGATAAGGGTTGGCTG 628 429 129 Antisense
GGCTGAATTTGTACAGGCGCCGGGC 31 535 149 Antisense
CCGGGCGATTGGGCATGGGTACTGG 126 265 168 Antisense
TATTCCAGAACTTTCGGGCTTCACG 288 663 250 Antisense
GGCTTCACGCCGGCGACAATATATC 529 537 266 Antisense
AATATATCTGGCTCAGTGGCGGTAA 74 117 283 Antisense
GCATATTCCATAGCTGCTGGCTGGG 578 307 395 Antisense
Sequence Source Affymetrix Proprietary Database