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[176373_at]

Description Y22D7AL.I /REP_DB=WormBase Gene ID /WP=CE26496 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 60      4grp_total > 43      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 4.9
(3)
A 		3.5
(-0.2)
A 		3.9
(0.7)
A 		2.3
(-3)
A 		3
B 4.5
(1.5)
A 		5.2
(3)
A 		3.7
(-0.2)
A 		2.4
(-3)
A 		3
C 3.2
(-3)
A 		9.6
(3)
A 		3.8
(-2.4)
A 		6.7
(0.3)
A 		6
avr 4.2
(-2) 		6.1
(3) 		3.8
(-3) 		3.8
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3.4
(0.3)
A 		2.8
(-3)
A 		3.9
(3)
A 		3.1
(-1.4)
A 		3.7
(1.9)
A 		3
(-1.9)
A 		1
B 5.7
(1)
A 		7.5
(3)
A 		3
(-2)
A 		2.5
(-2.6)
A 		2.1
(-3)
A 		4.4
(-0.4)
A 		5
C 2.4
(-2.6)
A 		3.5
(-2)
A 		4.9
(-1.3)
A 		12.7
(3)
A 		1.7
(-3)
A 		2.1
(-2.8)
A 		11
avr 3.8
(-0.8) 		4.6
(0.5) 		3.9
(-0.7) 		6.1
(3) 		2.5
(-3) 		3.2
(-1.8) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.8
(3)
A 		0.8
(-1)
A 		1
(-0.2)
A 		0.3
(-3)
A 		2
B 1.4
(3)
A 		1.3
(2.3)
A 		0.9
(-0.3)
A 		0.5
(-3)
A 		1
C 1
(-3)
A 		2.8
(3)
A 		1.3
(-2)
A 		1.1
(-2.7)
A 		2
avr 1.4
(1.8) 		1.6
(3) 		1.1
(0) 		0.6
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1
(1.8)
A 		0.9
(0.6)
A 		0.8
(-0.6)
A 		1.1
(3)
A 		0.7
(-1.8)
A 		1
B 2
(1.3)
A 		2.5
(3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		0.9
(-2.3)
A 		1.6
(0)
A 		2
C 0.9
(-1.8)
A 		1.1
(-1.2)
A 		1.2
(-0.9)
A 		2.5
(3)
A 		0.5
(-3)
A 		0.7
(-2.4)
A 		2
avr 1.2
(0.4) 		1.5
(3) 		0.9
(-2.1) 		1.3
(1.3) 		0.8
(-3) 		1
(-1.3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176373_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18985
Sequence Type Exemplar sequence
Representative Public ID Y22D7AL.I NCBI
Target Description Y22D7AL.I /REP_DB=WormBase Gene ID /WP=CE26496 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y22D7AL.I
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y22D7AL.I Y22D7AL.I /REP_DB=WormBase Gene ID /WP=CE26496 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065028 11/11 Negative Strand Matching Probes A 
GENEFINDER00000002278 10/11 Negative Strand Matching Probes None
Y22D7AL.5.3 11/11 Negative Strand Matching Probes None
Y22D7AL.5.2 11/11 Negative Strand Matching Probes None
Y22D7AL.5.1 10/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1619603-1620445(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:176373_AT
ggctctggcgagaactgtggcgcaggtggttccgtctccagcctcctcattagccttgtt
ggcgacatcttgaatgagcttggctcccaggttctggtatttgtccttgaggtcgatgga
tttcgcgacggtgactccgtcctttgtgatctttgggcttccccacgactgctcgatgat
cacgtttcttccctgaaagagtttggagttttagaggctgtatttatgaagaaaaaaaaa
ttaaattttgcattaaaccggaacattttttcctcaattttcacatcaaaatccccgtac
ttttgggcccatagtgacagagacggcgtcggcgagcaggttgactccgacgagcatggc
ctgtcgtccttcggctccgaacttgacgtccttggcgtaagatctgacgacggcggtctg
aagtccctttctggcgaggcgaagcatcttttgtgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTCTGGCGAGAACTGTGGCGCAG 652 539 223 Antisense
CCTCCTCATTAGCCTTGTTGGCGAC 353 267 264 Antisense
TGAATGAGCTTGGCTCCCAGGTTCT 312 575 293 Antisense
GGTTCTGGTATTTGTCCTTGAGGTC 427 505 312 Antisense
GGATTTCGCGACGGTGACTCCGTCC 424 509 340 Antisense
CTCCGTCCTTTGTGATCTTTGGGCT 15 235 357 Antisense
CGACTGCTCGATGATCACGTTTCTT 689 251 388 Antisense
TCGGCGAGCAGGTTGACTCCGACGA 188 607 551 Antisense
CGAACTTGACGTCCTTGGCGTAAGA 648 251 600 Antisense
GATCTGACGACGGCGGTCTGAAGTC 225 419 623 Antisense
GGCGAGGCGAAGCATCTTTTGTGTC 37 543 655 Antisense
Sequence Source Affymetrix Proprietary Database