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[176372_at]

Description Y72A10A.A /REP_DB=WormBase Gene ID /WP=CE22884 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_high1_10_10 > 04      6grp_total > 04      4grp_total > 54      6grp_high1_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 269
1 2 3 4 range
A 373.2
(3)
P 		285.2
(0.4)
A 		240.3
(-0.9)
A 		167.7
(-3)
A 		206
B 431.6
(3)
P 		305.4
(0.2)
A 		283.2
(-0.3)
A 		163
(-3)
A 		269
C 353.6
(3)
P 		271
(-0.2)
A 		296.5
(0.8)
A 		198.9
(-3)
A 		155
avr 386.1
(3) 		287.2
(0.2) 		273.3
(-0.2) 		176.5
(-3) 		210

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 287
1 2 3 4 5 6 range
A 309.8
(0.5)
P 		390.2
(3)
P 		348.7
(1.7)
P 		272.9
(-0.6)
P 		294.5
(0.1)
P 		194.5
(-3)
A 		196
B 406.8
(3)
P 		326.4
(-0.4)
P 		312.7
(-1)
P 		316.2
(-0.8)
P 		302.2
(-1.4)
P 		265.6
(-3)
P 		141
C 473.3
(3)
P 		397.1
(1.4)
P 		279.2
(-1.1)
M 		290.5
(-0.8)
P 		304.9
(-0.5)
P 		186.7
(-3)
P 		287
avr 396.6
(3) 		371.2
(2.2) 		313.5
(0.2) 		293.2
(-0.4) 		300.5
(-0.2) 		215.6
(-3) 		181
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 135.9
(3)
P 		61.9
(-1)
A 		62.8
(-0.9)
A 		24.6
(-3)
A 		111
B 137.6
(3)
P 		75.4
(-0.6)
A 		65.6
(-1.2)
A 		34.7
(-3)
A 		103
C 117.1
(3)
P 		77.9
(0.2)
A 		103.3
(2)
A 		33.5
(-3)
A 		84
avr 130.2
(3) 		71.7
(-0.5) 		77.2
(-0.2) 		30.9
(-3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 57.1
(-2.4)
P 		138.8
(3)
P 		75.9
(-1.1)
P 		69.2
(-1.6)
P 		88.9
(-0.3)
P 		47.3
(-3)
A 		92
B 141.5
(3)
P 		108.7
(0)
P 		75.9
(-3)
P 		83.7
(-2.3)
P 		122.8
(1.3)
P 		99
(-0.9)
P 		66
C 175.4
(3)
P 		121.2
(0.2)
P 		71.1
(-2.3)
M 		58.4
(-3)
P 		98.6
(-0.9)
P 		62.5
(-2.8)
P 		117
avr 124.7
(3) 		122.9
(2.8) 		74.3
(-2.5) 		70.4
(-2.9) 		103.4
(0.7) 		69.6
(-3) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176372_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19555
Sequence Type Exemplar sequence
Representative Public ID Y72A10A.A NCBI
Target Description Y72A10A.A /REP_DB=WormBase Gene ID /WP=CE22884 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076629(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076629 NCBI Caenorhabditis elegans Y72A10A.1 (Y72A10A.1) mRNA, complete cds. 11/11 None
GENEFINDER00000030414 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6130708:6133165:-1 11/11 None
Y72A10A.1 ENSEMBL cdna:known chromosome:CEL140:X:6129517:6133128:-1 gene:Y72A10A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030412 8/11 Cross Hyb Matching Probes None
SNAP00000030413 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6130707-6133128(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y72A10A.1
Entrez Gene 190620 Entrez gene
WormBase CE37172 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_509030 Y72A10A.1 [Caenorhabditis elegans] 1.0E-104
blast ABA00162 Hypothetical protein Y72A10A.1 [Caenorhabditis elegans] 1.0E-93
blast NP_509030 Y72A10A.1 [Caenorhabditis elegans] 1.0E-93
blast ABA00162 Hypothetical protein Y72A10A.1 [Caenorhabditis elegans] 2.0E-93
blast CAE68877 Hypothetical protein CBG14840 [Caenorhabditis briggsae] 5.0E-93
blast CAE68877 Hypothetical protein CBG14840 [Caenorhabditis briggsae] 3.0E-92
Sequence
Target Sequence 
>C. ELEGANS:176372_AT
gtttcgatggaccaatcttctggaaacgtcaagtcgcttacatctactgttgttcatgtc
attttgatgagcatgagggaccattgatggcaattctggagaagtttgaacagcgagtgg
agcgtgtatgtttggtcgacaagccggtggactacccatttctcccggattccctgtttt
catacatggcgaacaagatgccaaaactgcagttcatctatctacgcgagctggacctgg
agaaaatcaatcgaggaaccgtagttgaacttgccaatcatccgaacttgaaaaaggtga
tcgttcacctctgccgaaactacgaagtacttgaggacttccgaaacttgccaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTCGATGGACCAATCTTCTGGAA 269 451 110 Antisense
GGAAACGTCAAGTCGCTTACATCTA 17 529 131 Antisense
GTCGCTTACATCTACTGTTGTTCAT 205 475 142 Antisense
GCGAGTGGAGCGTGTATGTTTGGTC 497 289 222 Antisense
TTGGTCGACAAGCCGGTGGACTACC 226 705 241 Antisense
GGATTCCCTGTTTTCATACATGGCG 362 509 276 Antisense
AAACTGCAGTTCATCTATCTACGCG 572 127 313 Antisense
TCTACGCGAGCTGGACCTGGAGAAA 181 615 330 Antisense
GTAGTTGAACTTGCCAATCATCCGA 391 455 370 Antisense
TTCACCTCTGCCGAAACTACGAAGT 345 685 413 Antisense
TTGAGGACTTCCGAAACTTGCCACA 441 701 440 Antisense
Sequence Source Affymetrix Proprietary Database