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[176371_at]

Description Y38F2AR.B /REP_DB=WormBase Gene ID /WP=CE21627 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 28      4grp_high_8_8 > 29      6grp_highest_nonorm > 90      6grp_total > 28      4grp_total > 17      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 74.5
(-3)
P 		74.4
(-3)
A 		78.3
(-2.8)
P 		205.4
(3)
P 		131
B 71
(-3)
P 		152.3
(3)
P 		140.2
(2.1)
P 		115.2
(0.3)
P 		81
C 100.1
(-3)
P 		108.3
(-2.1)
P 		112.7
(-1.6)
P 		153.9
(3)
P 		54
avr 81.9
(-3) 		111.7
(-0.7) 		110.4
(-0.8) 		158.2
(3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 170.7
(2.4)
P 		179.2
(3)
P 		156.5
(1.4)
P 		93.6
(-3)
P 		141.3
(0.3)
P 		156.9
(1.4)
P 		86
B 234.2
(3)
P 		134
(-3)
P 		153.5
(-1.8)
P 		135.6
(-2.9)
P 		154.9
(-1.7)
P 		163.1
(-1.3)
P 		100
C 240.1
(3)
P 		142.7
(-1.8)
P 		174.1
(-0.2)
P 		117.1
(-3)
P 		190.7
(0.6)
P 		119.2
(-2.9)
P 		123
avr 215
(3) 		152
(-0.8) 		161.4
(-0.2) 		115.4
(-3) 		162.3
(-0.2) 		146.4
(-1.1) 		100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 27.1
(1.7)
P 		16.1
(-3)
A 		20.5
(-1.1)
P 		30.1
(3)
P 		14
B 22.6
(-3)
P 		37.6
(3)
P 		32.5
(1)
P 		24.5
(-2.2)
P 		15
C 33.1
(0.2)
P 		31.1
(-0.7)
P 		39.3
(3)
P 		26
(-3)
P 		13
avr 27.6
(-1.9) 		28.3
(-0.8) 		30.8
(3) 		26.9
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 31.5
(-1.8)
P 		63.7
(3)
P 		34.1
(-1.4)
P 		23.7
(-3)
P 		42.6
(-0.2)
P 		38.2
(-0.8)
P 		40
B 81.5
(3)
P 		44.6
(-1.9)
P 		37.3
(-2.8)
P 		35.9
(-3)
P 		62.9
(0.6)
P 		60.8
(0.3)
P 		46
C 89
(3)
P 		43.6
(-1.2)
P 		44.3
(-1.1)
P 		23.6
(-3)
P 		61.7
(0.5)
P 		39.9
(-1.5)
P 		65
avr 67.3
(3) 		50.6
(0.5) 		38.6
(-1.3) 		27.7
(-3) 		55.7
(1.2) 		46.3
(-0.2) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176371_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19149
Sequence Type Exemplar sequence
Representative Public ID Y38F2AR.B NCBI
Target Description Y38F2AR.B /REP_DB=WormBase Gene ID /WP=CE21627 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028283(11), NM_001028284(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028283 NCBI Caenorhabditis elegans Y38F2AR.11a (Y38F2AR.11) mRNA, complete cds. 11/11 None
NM_001028284 NCBI Caenorhabditis elegans Y38F2AR.11b (Y38F2AR.11) mRNA, complete cds. 11/11 None
SNAP00000033669 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2399558:2404451:-1 11/11 None
GENEFINDER00000033676 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2399492:2412408:-1 11/11 None
Y38F2AR.11a ENSEMBL cdna:known chromosome:CEL140:IV:2399558:2405724:-1 gene:Y38F2AR.11 11/11 None
Y38F2AR.11b ENSEMBL cdna:known chromosome:CEL140:IV:2399558:2403141:-1 gene:Y38F2AR.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2399563-2405730(-) 99.82 100.0
Public Domain and Genome References
Ensembl Y38F2AR.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001023454 Y38F2AR.11a [Caenorhabditis elegans] gb|AAK68441.2| Hypothetical protein Y38F2AR.11a [Caenorhabditis elegans] 0.0
blast CAE70292 Hypothetical protein CBG16813 [Caenorhabditis briggsae] 0.0
blast NP_001023455 Y38F2AR.11b [Caenorhabditis elegans] gb|AAP13753.1| Hypothetical protein Y38F2AR.11b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003692 EMBL-EBI Hydantoinase B/oxoprolinase 1.0E-126
Pfam IPR003692 EMBL-EBI Hydantoinase B/oxoprolinase 1.0E-126
Pfam IPR003692 EMBL-EBI Hydantoinase B/oxoprolinase 1.0E-126
Pfam IPR002821 EMBL-EBI Hydantoinase/oxoprolinase 1.0E-126
Pfam IPR003692 EMBL-EBI Hydantoinase B/oxoprolinase 1.0E-126
Pfam IPR008040 EMBL-EBI Hydantoinaseoxoprolinase, N-terminal 2.5E-92
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000033676 1 1271-1288
Sequence
Target Sequence 
>C. ELEGANS:176371_AT
taacggatgcttggcgccgattcagataaagatccccgagggaacactgctgtcgccgtc
ggaaactgccccggttgtagctggaaatgtgctgactagccagagactttgtgatgtcat
ttttaagacatttgacattgtcgccgccagtcaaggatgcatgaacaacttggtgttcgg
cgacgagacttgcggttactacgagacgattgccggcggtgccggcgccggcaacgggtt
ccacggacgaagtggagtgcatacgcacatgacgaacacaagaatcacggatcctgagat
tttggagaacaggttcccggtgatacttcgggaatggaaattgagagatggatccggtgg
aagtggaaaatgggagggcggtgatggagttgtgaggcagttggagtttacgagaaagct
cacattgagtctgctgactgagagacgcgcattccaaccgtatgggcttcacggcggtca
gcccggacaacgaggtctgaatttgctgaaacgaggtggaagagctgtaaatattgggtc
gaaagcgagttttgaaattcaaaaaggggatattttatgcatcgaaactccgggtggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACGGATGCTTGGCGCCGATTCAG 236 639 1629 Antisense
AGATCCCCGAGGGAACACTGCTGTC 646 65 1658 Antisense
CTGCCCCGGTTGTAGCTGGAAATGT 504 235 1694 Antisense
TCGCCGCCAGTCAAGGATGCATGAA 318 599 1769 Antisense
TTCGGCGACGAGACTTGCGGTTACT 28 693 1804 Antisense
TACTACGAGACGATTGCCGGCGGTG 73 645 1825 Antisense
GAGAACAGGTTCCCGGTGATACTTC 704 387 1933 Antisense
TGCTGACTGAGAGACGCGCATTCCA 300 577 2060 Antisense
CCAACCGTATGGGCTTCACGGCGGT 453 273 2082 Antisense
GTCAGCCCGGACAACGAGGTCTGAA 74 465 2105 Antisense
TTTATGCATCGAAACTCCGGGTGGC 679 673 2202 Antisense
Sequence Source Affymetrix Proprietary Database