[Home] | [Total List]

[176370_at]

Description Y22D7AL.G /REP_DB=WormBase Gene ID /WP=CE26494 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 19      4grp_total > 24      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 38.2
(-3)
A 		102.2
(2.1)
P 		67
(-0.7)
A 		113.3
(3)
A 		75
B 10.1
(-3)
A 		30.9
(-1.4)
A 		90.4
(3)
A 		74.2
(1.8)
A 		80
C 51.7
(-0.2)
A 		26.2
(-3)
A 		48.1
(-0.6)
A 		79.9
(3)
A 		54
avr 33.3
(-3) 		53.1
(-0.9) 		68.5
(0.8) 		89.1
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 53.5
(3)
A 		15.7
(-1.7)
A 		30.8
(0.2)
A 		7.9
(-2.7)
A 		33.9
(0.6)
A 		5.5
(-3)
A 		48
B 36
(-0.3)
A 		11.3
(-3)
A 		40.1
(0.1)
A 		66.5
(3)
A 		24.6
(-1.6)
A 		24.7
(-1.5)
A 		55
C 28.3
(-0.6)
A 		43.8
(1.3)
A 		8.3
(-3)
A 		15.7
(-2.1)
A 		57.7
(3)
A 		36.8
(0.5)
A 		49
avr 39.3
(3) 		23.6
(-2.5) 		26.4
(-1.6) 		30
(-0.3) 		38.7
(2.8) 		22.3
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 13.9
(-3)
A 		22.2
(3)
P 		17.5
(-0.4)
A 		16.6
(-1)
A 		8
B 3.2
(-3)
A 		7.6
(-1.5)
A 		20.9
(3)
A 		15.8
(1.3)
A 		18
C 17.1
(3)
A 		7.5
(-3)
A 		16.8
(2.8)
A 		13.5
(0.7)
A 		10
avr 11.4
(-3) 		12.4
(-2.1) 		18.4
(3) 		15.3
(0.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 9.9
(2.8)
A 		5.6
(-0.1)
A 		6.7
(0.6)
A 		2
(-2.5)
A 		10.2
(3)
A 		1.3
(-3)
A 		9
B 12.5
(0.8)
A 		3.8
(-3)
A 		9.7
(-0.4)
A 		17.6
(3)
A 		10
(-0.3)
A 		9.2
(-0.7)
A 		14
C 10.5
(0)
A 		13.4
(1.1)
A 		2.1
(-3)
A 		3.1
(-2.6)
A 		18.7
(3)
A 		12.3
(0.7)
A 		17
avr 11
(1.2) 		7.6
(-1.8) 		6.2
(-3) 		7.6
(-1.8) 		13
(3) 		7.6
(-1.8) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176370_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19065
Sequence Type Exemplar sequence
Representative Public ID Y22D7AL.G NCBI
Target Description Y22D7AL.G /REP_DB=WormBase Gene ID /WP=CE26494 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065030(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065030 NCBI Caenorhabditis elegans Y22D7AL.11 (Y22D7AL.11) mRNA, complete cds. 11/11 None
GENEFINDER00000002282 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1630593:1633741:-1 10/11 None
Y22D7AL.11 ENSEMBL cdna:known chromosome:CEL140:III:1631796:1634440:-1 gene:Y22D7AL.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1631795-1634440(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y22D7AL.11
Entrez Gene 189504 Entrez gene
WormBase CE39039 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84585 Hypothetical protein Y22D7AL.11 [Caenorhabditis elegans] ref|NP_497431.1| Y22D7AL.11 [Caenorhabditis elegans] 0.0
blast AAK84585 Hypothetical protein Y22D7AL.11 [Caenorhabditis elegans] ref|NP_497431.1| Y22D7AL.11 [Caenorhabditis elegans] 1.0E-134
blast CAE66429 Hypothetical protein CBG11699 [Caenorhabditis briggsae] 2.0E-97
blast CAE69205 Hypothetical protein CBG15245 [Caenorhabditis briggsae] 1.0E-88
blast CAE66429 Hypothetical protein CBG11699 [Caenorhabditis briggsae] 1.0E-49
blast CAE69205 Hypothetical protein CBG15245 [Caenorhabditis briggsae] 1.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR009644 EMBL-EBI Fukutin-related 1.1E-26
Pfam IPR009644 EMBL-EBI Fukutin-related 2.4E-13
Pfam IPR009644 EMBL-EBI Fukutin-related 1.1E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000002282 1 16-38
Sequence
Target Sequence 
>C. ELEGANS:176370_AT
acagactacctggattttcacacccagccacggaaaattattccacaaaatttcccgaat
attcaaataggcaacctactcgtgcctaccgtaatcccgcaatttctagaattttggcgc
cgtgccaagtttcagagctgccggaatgtgtcaatgtcggagagggactcgctgagcatg
gtttactggaaatttaagattttgcagagatttcagctaacagcccccaaaatcccatca
aaagagtccgtggagcatttggcggtgctccgcgacgagatgctccaattcgggatttac
ccattcctaaatggcggaacttttttggggtggtaccgagaatgtacagtaattccacat
actactgatatggatttggccgtgttttccgagaattggaatcccgagtttttggagttt
ttgtggagccggcagtcgaaatttcgggttaagcggcagtttgggatggtgagttgcggg
ggtttaccgattttttttttgaactttttaacaaaaaattcaaattccccatcaaattct
accctagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGACTACCTGGATTTTCACACCC 277 109 526 Antisense
CTACCGTAATCCCGCAATTTCTAGA 469 225 611 Antisense
CCGTGCCAAGTTTCAGAGCTGCCGG 332 265 645 Antisense
GAGCTGCCGGAATGTGTCAATGTCG 328 387 660 Antisense
GACTCGCTGAGCATGGTTTACTGGA 376 373 691 Antisense
GCAGAGATTTCAGCTAACAGCCCCC 425 311 729 Antisense
GAGTCCGTGGAGCATTTGGCGGTGC 472 399 769 Antisense
GATGCTCCAATTCGGGATTTACCCA 446 411 804 Antisense
ATTTGGCCGTGTTTTCCGAGAATTG 267 17 899 Antisense
AGTTTTTGTGGAGCCGGCAGTCGAA 697 57 941 Antisense
TTCCCCATCAAATTCTACCCTAGAA 644 695 1050 Antisense
Sequence Source Affymetrix Proprietary Database