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[176367_at]

Description Y22D7AL.F /REP_DB=WormBase Gene ID /WP=CE26493 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 43      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 11.8
(-3)
A 		13.3
(-2.5)
A 		16.9
(-1.2)
A 		28.5
(3)
A 		17
B 13.4
(-3)
A 		48.8
(1.1)
A 		26.7
(-1.5)
A 		65.3
(3)
A 		52
C 63.1
(3)
A 		41.5
(-0.1)
A 		21.1
(-3)
A 		63.4
(3)
A 		42
avr 29.4
(-1.5) 		34.5
(-0.5) 		21.6
(-3) 		52.4
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 28.3
(-0.3)
A 		8.2
(-3)
A 		52.4
(3)
P 		8.1
(-3)
A 		41.9
(1.6)
A 		27.3
(-0.4)
A 		44
B 39.5
(1)
A 		49.6
(2.5)
A 		26.7
(-0.9)
A 		53.4
(3)
A 		35.7
(0.4)
A 		11.9
(-3)
A 		42
C 32.2
(1.9)
A 		24.3
(0.3)
A 		38.2
(3)
A 		23.7
(0.2)
A 		6.8
(-3)
A 		30.1
(1.5)
A 		31
avr 33.3
(0.8) 		27.4
(-1.4) 		39.1
(3) 		28.4
(-1) 		28.1
(-1.1) 		23.1
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 4.3
(2.6)
A 		2.9
(-3)
A 		4.4
(3)
A 		4.2
(2.2)
A 		2
B 4.3
(-3)
A 		12.1
(1.9)
A 		6.2
(-1.8)
A 		13.9
(3)
A 		10
C 20.9
(3)
A 		11.9
(-1)
A 		7.3
(-3)
A 		10.7
(-1.5)
A 		14
avr 9.8
(3) 		9
(1.7) 		6
(-3) 		9.6
(2.7) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 5.2
(-1.2)
A 		2.9
(-2.5)
A 		11.4
(2.3)
P 		2.1
(-3)
A 		12.6
(3)
A 		6.7
(-0.4)
A 		11
B 13.7
(1.6)
A 		16.5
(3)
A 		6.5
(-2)
A 		14.1
(1.8)
A 		14.5
(2)
A 		4.5
(-3)
A 		12
C 11.9
(3)
A 		7.4
(0.2)
A 		9.7
(1.6)
A 		4.8
(-1.4)
A 		2.2
(-3)
A 		10.1
(1.9)
A 		10
avr 10.3
(3) 		8.9
(0.5) 		9.2
(1) 		7
(-3) 		9.8
(2.1) 		7.1
(-2.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176367_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18987
Sequence Type Exemplar sequence
Representative Public ID Y22D7AL.F NCBI
Target Description Y22D7AL.F /REP_DB=WormBase Gene ID /WP=CE26493 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065033(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065033 NCBI Caenorhabditis elegans Y22D7AL.12 (Y22D7AL.12) mRNA, complete cds. 11/11 None
Y22D7AL.12 ENSEMBL cdna:known chromosome:CEL140:III:1642638:1644552:-1 gene:Y22D7AL.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002269 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1642637-1644552(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y22D7AL.12
Entrez Gene 189505 Entrez gene
SwissProt Q965P5 EMBL-EBI
WormBase CE26493 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84586 Hypothetical protein Y22D7AL.12 [Caenorhabditis elegans] ref|NP_497434.1| Y22D7AL.12 [Caenorhabditis elegans] 2.0E-45
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497434.1 1 31-50
Y22D7AL.12 1 31-50
Sequence
Target Sequence 
>C. ELEGANS:176367_AT
gccaccaccaaacatcatcaaagtcgaaaacttccacgacccgattccagaaccggaagc
tcacacaagaatccgctactcgaagaagtgtgtcgtcggctatagcattttgtttggtct
cttcgcaattctcatgcagactctcatatcggaaaatctaaagaagtgttgcatatcata
tatccctaactggtcttccgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCACCACCAAACATCATCAAAGTC 519 279 15 Antisense
GACCCGATTCCAGAACCGGAAGCTC 102 381 52 Antisense
TCCAGAACCGGAAGCTCACACAAGA 274 589 60 Antisense
CTCACACAAGAATCCGCTACTCGAA 536 227 74 Antisense
AGAATCCGCTACTCGAAGAAGTGTG 683 73 82 Antisense
GAAGTGTGTCGTCGGCTATAGCATT 348 335 99 Antisense
TAGCATTTTGTTTGGTCTCTTCGCA 91 653 117 Antisense
GTCTCTTCGCAATTCTCATGCAGAC 653 469 131 Antisense
TCTCATGCAGACTCTCATATCGGAA 531 611 144 Antisense
AAGTGTTGCATATCATATATCCCTA 467 159 178 Antisense
TATATCCCTAACTGGTCTTCCGAAA 551 659 193 Antisense
Sequence Source Affymetrix Proprietary Database