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[176366_at]

Description Y47D7A.4 /REP_DB=WormBase Gene ID /WP=CE24350 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 12      6grp_cgc > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 80.5
(-0.8)
A 		60.1
(-1.7)
A 		30.3
(-3)
A 		165.7
(3)
A 		135
B 88.3
(-0.5)
A 		91.8
(0.7)
A 		99
(3)
A 		80.5
(-3)
A 		19
C 77.9
(-1.7)
A 		69.3
(-2.8)
A 		67.7
(-3)
A 		114.2
(3)
A 		47
avr 82.2
(-1.2) 		73.7
(-2.1) 		65.7
(-3) 		120.1
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 9.9
(-2.7)
A 		82.8
(3)
A 		52.3
(0.6)
A 		48.1
(0.3)
A 		6.4
(-3)
A 		53.7
(0.7)
A 		76
B 49.4
(-0.3)
A 		55.1
(0.1)
A 		102.3
(3)
A 		4.7
(-3)
A 		53.4
(-0)
A 		36.8
(-1)
A 		98
C 65.7
(3)
A 		28.9
(-1.1)
A 		56.1
(1.9)
A 		12.1
(-3)
A 		47.3
(0.9)
A 		32.3
(-0.7)
A 		54
avr 41.7
(-0.5) 		55.6
(1.2) 		70.2
(3) 		21.6
(-3) 		35.7
(-1.3) 		40.9
(-0.6) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 29.3
(3)
A 		13
(-1.6)
A 		7.9
(-3)
A 		24.3
(1.6)
A 		21
B 28.2
(3)
A 		22.7
(0)
A 		22.9
(0.1)
A 		17.2
(-3)
A 		11
C 25.8
(3)
A 		19.9
(-2.4)
A 		23.6
(1)
A 		19.3
(-3)
A 		7
avr 27.8
(3) 		18.5
(-2.8) 		18.1
(-3) 		20.3
(-1.6) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 1.8
(-3)
A 		29.4
(3)
A 		11.4
(-0.9)
A 		12.2
(-0.7)
A 		1.9
(-3)
A 		13.1
(-0.5)
A 		28
B 17.2
(1.1)
A 		18.4
(1.4)
A 		24.8
(3)
A 		1.2
(-3)
A 		21.7
(2.2)
A 		13.7
(0.2)
A 		24
C 24.3
(3)
A 		8.8
(-1.2)
A 		14.3
(0.3)
A 		2.4
(-3)
A 		15.3
(0.5)
A 		10.8
(-0.7)
A 		22
avr 14.4
(1) 		18.9
(3) 		16.8
(2.1) 		5.3
(-3) 		13
(0.4) 		12.5
(0.2) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176366_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15686
Sequence Type Exemplar sequence
Representative Public ID Y47D7A.4 NCBI
Target Description Y47D7A.4 /REP_DB=WormBase Gene ID /WP=CE24350 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071813(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071813 NCBI Caenorhabditis elegans Y47D7A.4 (Y47D7A.4) mRNA, complete cds. 11/11 None
SNAP00000043256 ENSEMBL cdna:SNAP chromosome:CEL140:V:4409538:4410094:1 11/11 None
GENEFINDER00000043285 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4409285:4410094:1 11/11 None
Y47D7A.4 ENSEMBL cdna:known chromosome:CEL140:V:4409285:4410094:1 gene:Y47D7A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4409284-4410094(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47D7A.4
Entrez Gene 189982 Entrez gene
WormBase CE24350 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504214 Y47D7A.4 [Caenorhabditis elegans] 3.0E-76
blast NP_504214 Y47D7A.4 [Caenorhabditis elegans] 2.0E-68
blast AAR11993 nuclear receptor NHR-100 [Caenorhabditis elegans] emb|CAB05126.3| Hypothetical protein C28D4.1 [Caenorhabditis elegans] ref|NP_501731.1| Nuclear Hormone Receptor family member (nhr-100) [Caenorhabditis elegans] 3.0E-30
blast AAO39188 nuclear receptor NHR-100 [Caenorhabditis elegans] 3.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.0E-15
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.0E-15
Sequence
Target Sequence 
>C. ELEGANS:176366_AT
gtacagtcgatttattcctgacccaagtggtatatcggataaaggagctgaaaatcgatg
agaccgaaatcacacttttgaaggcgatatgccacttgcaacccagtcctcaattatcaa
gacatgccattgaaatagtagcgaatggacagacaaagtacaaaaaagttctgtgtgaat
atattcgatcaaataccgatgggtatatggatgcttccatacgactgtgcaagattctgc
agatcctgccggaacttgatgcactcgccaaactcgaagaggacaatggactgttggttt
cactcagtggcatcgaactcaatgcagctcgccaggaagtgcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACAGTCGATTTATTCCTGACCCA 183 461 74 Antisense
GAAGGCGATATGCCACTTGCAACCC 397 331 153 Antisense
TGCAACCCAGTCCTCAATTATCAAG 652 575 170 Antisense
GATGCTTCCATACGACTGTGCAAGA 141 413 283 Antisense
GTGCAAGATTCTGCAGATCCTGCCG 140 481 300 Antisense
GCAGATCCTGCCGGAACTTGATGCA 348 313 312 Antisense
ACTTGATGCACTCGCCAAACTCGAA 131 105 327 Antisense
GACAATGGACTGTTGGTTTCACTCA 66 365 355 Antisense
GTTTCACTCAGTGGCATCGAACTCA 114 451 370 Antisense
CATCGAACTCAATGCAGCTCGCCAG 95 213 384 Antisense
AATGCAGCTCGCCAGGAAGTGCTTC 293 165 394 Antisense
Sequence Source Affymetrix Proprietary Database