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[176365_at]

Description Y119D3A.A /REP_DB=WormBase Gene ID /WP=CE23398 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 03      4grp_total > 63      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 26.3
(3)
A 		2.2
(-2.8)
A 		23.5
(2.3)
A 		1.4
(-3)
A 		25
B 40.5
(3)
A 		12.8
(-1.3)
A 		19.3
(-0.3)
A 		1.4
(-3)
A 		39
C 15.7
(-1.9)
A 		10.5
(-3)
A 		19.6
(-1.1)
A 		38.5
(3)
A 		28
avr 27.5
(3) 		8.5
(-3) 		20.8
(0.9) 		13.8
(-1.3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 22.5
(-2.5)
A 		42.5
(0.1)
A 		37.3
(-0.6)
A 		47
(0.6)
A 		65.6
(3)
A 		18.2
(-3)
A 		47
B 56.2
(2.3)
P 		59.1
(2.6)
A 		22.6
(-1)
A 		62.8
(3)
A 		37.8
(0.5)
A 		2.3
(-3)
A 		61
C 50.3
(2)
A 		47.5
(1.5)
A 		29.7
(-1.8)
A 		55.6
(3)
A 		35.2
(-0.8)
A 		23.4
(-3)
A 		32
avr 43
(1.2) 		49.7
(2.2) 		29.9
(-0.7) 		55.1
(3) 		46.2
(1.7) 		14.6
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 9.6
(3)
A 		0.5
(-2.8)
A 		6.1
(0.8)
A 		0.2
(-3)
A 		9
B 12.9
(3)
A 		3.2
(-1.6)
A 		4.5
(-1)
A 		0.3
(-3)
A 		13
C 5.2
(0.5)
A 		3
(-3)
A 		6.8
(3)
A 		6.5
(2.5)
A 		4
avr 9.2
(3) 		2.2
(-3) 		5.8
(0.1) 		2.3
(-2.9) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 4.1
(-3)
A 		15.1
(1.2)
A 		8.1
(-1.5)
A 		11.9
(-0)
A 		19.8
(3)
A 		4.4
(-2.9)
A 		16
B 19.5
(2.9)
P 		19.7
(3)
A 		5.5
(-1.5)
A 		16.6
(2)
A 		15.4
(1.6)
A 		0.9
(-3)
A 		19
C 18.6
(3)
A 		14.5
(0.8)
A 		7.6
(-3)
A 		11.2
(-1)
A 		11.4
(-0.9)
A 		7.8
(-2.9)
A 		11
avr 14.1
(1.9) 		16.4
(3) 		7.1
(-1.7) 		13.2
(1.4) 		15.5
(2.6) 		4.4
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176365_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19075
Sequence Type Exemplar sequence
Representative Public ID Y119D3A.A NCBI
Target Description Y119D3A.A /REP_DB=WormBase Gene ID /WP=CE23398 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064972(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064972 NCBI Caenorhabditis elegans Y119D3A.4 (Y119D3A.4) mRNA, complete cds. 10/11 None
GENEFINDER00000014151 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1292041:1294464:-1 11/11 None
Y119D3A.4 ENSEMBL cdna:known chromosome:CEL140:III:1292041:1293386:-1 gene:Y119D3A.4 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014143 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1292040-1293715(-) 49.45 63.17
Public Domain and Genome References
Gene Title
Ensembl Y119D3A.4
Entrez Gene 191035 Entrez gene
SwissProt Q966E6 EMBL-EBI
WormBase CE27455 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68407 Hypothetical protein Y119D3A.4 [Caenorhabditis elegans] ref|NP_497373.1| Y119D3A.4 [Caenorhabditis elegans] 0.0
blast AAC68936 Hypothetical protein T12B5.6 [Caenorhabditis elegans] ref|NP_497296.1| T12B5.6 [Caenorhabditis elegans] 0.0
blast T18779 transposase containing protein - Caenorhabditis elegans 0.0
blast T19261 hypothetical protein C14A6.4 - Caenorhabditis elegans 0.0
blast AAK68406 Hypothetical protein Y119D3A.3 [Caenorhabditis elegans] ref|NP_497375.1| Y119D3A.3 [Caenorhabditis elegans] 1.0E-103
blast CAB03489 Hypothetical protein ZC47.4 [Caenorhabditis elegans] ref|NP_497367.1| ZC47.4 [Caenorhabditis elegans] 4.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 4.6E-40
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 9.0E-11
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.1E-37
Pfam IPR001888 EMBL-EBI Transposase, type 1 2.8E-41
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 9.0E-11
Sequence
Target Sequence 
>C. ELEGANS:176365_AT
cttctgaagcatgcatcttgtctatatattatatcctatttgaatgaccaagatagagaa
cacgctgtcaattctctagttgacgtcttgaaaaaggaagtggatatccacatgaaaacg
atatctttgcatcgtgacttatcaatcgacgatattgtattaatccttccgttattcaat
agtcaaacattgagaaaactttggataagaggaatctttccagctcatgactttgagaga
ataactcatttggatcagtggaaaaaggcgaaaaaattcaagttatgggaaacctcgtgg
gaatgtttgcctatcgaatatttcttccattttgagaagtttcgtattgatattgtcaag
aatcatgatattccaatacaaagtgtgattaaaattcgagatgtaagtaactctttaact
gatttgctgcaaagaagtacgttccggaaatgcgtaatttcggttataaacgtaaatttt
aaccctgaacttgcaagaatatttcaaccggactatgctggttgcgatgaattcaccatg
gagtattcaaccggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCTGAAGCATGCATCTTGTCTAT 547 219 1213 Antisense
GAACACGCTGTCAATTCTCTAGTTG 604 351 1270 Antisense
ATCTTTGCATCGTGACTTATCAATC 413 31 1335 Antisense
ATTGTATTAATCCTTCCGTTATTCA 382 3 1366 Antisense
AGAGGAATCTTTCCAGCTCATGACT 274 67 1420 Antisense
GGAAACCTCGTGGGAATGTTTGCCT 484 527 1500 Antisense
GTTTGCCTATCGAATATTTCTTCCA 323 451 1517 Antisense
GTAACTCTTTAACTGATTTGCTGCA 672 461 1619 Antisense
TAAATTTTAACCCTGAACTTGCAAG 372 315 1685 Antisense
GGACTATGCTGGTTGCGATGAATTC 489 525 1722 Antisense
TTCACCATGGAGTATTCAACCGGGA 580 681 1744 Antisense
Sequence Source Affymetrix Proprietary Database