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[176364_s_at]

Description Y71G12B.N /REP_DB=WormBase Gene ID /WP=CE22925 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 09      4grp_total > 22      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 231
1 2 3 4 range
A 248.9
(0.3)
A 		156.4
(-3)
A 		169.1
(-2.5)
A 		325.5
(3)
A 		169
B 259.4
(3)
P 		195.5
(-2.5)
A 		201.4
(-2)
A 		190
(-3)
A 		69
C 265.9
(3)
A 		152.1
(-1)
A 		94.4
(-3)
A 		241.9
(2.2)
P 		172
avr 258.1
(3) 		168
(-2.2) 		155
(-3) 		252.5
(2.7) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 327.3
(3)
P 		172.5
(-3)
A 		194.5
(-2.1)
P 		173.2
(-3)
P 		259
(0.4)
P 		223.7
(-1)
P 		155
B 266.4
(1)
P 		186
(-3)
A 		218.3
(-1.4)
P 		307.1
(3)
P 		225.7
(-1)
P 		187.3
(-2.9)
M 		121
C 249.6
(0.2)
M 		147.2
(-3)
A 		318.6
(2.4)
P 		337.3
(3)
P 		206.8
(-1.1)
A 		176.3
(-2.1)
P 		190
avr 281.1
(3) 		168.6
(-3) 		243.8
(1) 		272.5
(2.5) 		230.5
(0.3) 		195.8
(-1.5) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 90.6
(3)
A 		34
(-3)
A 		44.2
(-1.9)
A 		47.7
(-1.5)
A 		57
B 82.7
(3)
P 		48.3
(-1.9)
A 		46.7
(-2.1)
A 		40.5
(-3)
A 		42
C 88
(3)
A 		43.7
(-1.8)
A 		32.9
(-3)
A 		40.8
(-2.1)
P 		55
avr 87.1
(3) 		42
(-2.9) 		41.3
(-3) 		43
(-2.8) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 60.3
(-0)
P 		61.4
(0.2)
A 		42.4
(-3)
P 		43.9
(-2.7)
P 		78.2
(3)
P 		54.5
(-1)
P 		36
B 92.7
(3)
P 		61.9
(-1.7)
A 		53
(-3)
P 		81.3
(1.3)
P 		91.7
(2.8)
P 		69.8
(-0.5)
M 		40
C 92.5
(3)
M 		44.9
(-3)
A 		81.1
(1.6)
P 		67.8
(-0.1)
P 		66.9
(-0.2)
A 		59
(-1.2)
P 		48
avr 81.8
(3) 		56.1
(-3) 		58.8
(-2.4) 		64.3
(-1.1) 		78.9
(2.3) 		61.1
(-1.8) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176364_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18669
Sequence Type Exemplar sequence
Representative Public ID Y71G12B.N NCBI
Target Description Y71G12B.N /REP_DB=WormBase Gene ID /WP=CE22925 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058476(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058476 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-88) (pqn-88) mRNA, complete cds. 11/11 None
GENEFINDER00000001822 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1655425:1663322:-1 10/11 None
SNAP00000001774 ENSEMBL cdna:SNAP chromosome:CEL140:I:1655664:1656701:-1 11/11 None
Y71G12B.21 ENSEMBL cdna:known chromosome:CEL140:I:1655664:1656727:-1 gene:Y71G12B.21 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1655663-1656701(-) 93.13 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-88
Ensembl Y71G12B.21
Entrez Gene 171728 Entrez gene
SwissProt Q95XP2 EMBL-EBI
WormBase CE22925 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAY55897 Hypothetical protein Y71G12B.33 [Caenorhabditis elegans] ref|NP_001021826.1| Y71G12B.33 [Caenorhabditis elegans] 2.0E-50
blast CAE74475 Hypothetical protein CBG22223 [Caenorhabditis briggsae] 7.0E-15
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000001822 4 98-120,140-162,175-197,379-396
Sequence
Target Sequence 
>C. ELEGANS:176364_S_AT
atttcttattggcttcttctctaatcgctgccacctggagccaacgtgttccaccatcga
ctactccagtgcctccaccaaattttccggacccgccgacccaggagcaggttcagcaac
agggaggcggattctttgggaatctagaaaatgggatctcaacgactcctggagcatttt
ttggtggaaatggaggattccagccgcaacagaatcaacagaaccagggattgaacaata
ataatggcggattttttggtgggaacaacaatcaaaaccaacagcaaccgcagcagcaag
gatttcaaacacagccgccatccaataacttcttcggaaaccaaaacgatcccaccaatc
agggattccaaaataataacaataacaatgttaataacaataataatcaacagcaactcc
aaaaccaacaaggattccaaaaccaaaaccaaggattccaacaacaacaacagaatgtta
ataacaatcaagtaacatttggtcagcaaggtgtaaatcaaggattccctgtgtccaatg
cattcccgactaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCTTATTGGCTTCTTCTCTAAT 215 17 23 Antisense
CGACCCAGGAGCAGGTTCAGCAACA 66 249 119 Antisense
ACAGGGAGGCGGATTCTTTGGGAAT 66 95 141 Antisense
GATCTCAACGACTCCTGGAGCATTT 303 419 177 Antisense
CGACTCCTGGAGCATTTTTTGGTGG 707 251 185 Antisense
AATGGAGGATTCCAGCCGCAACAGA 109 163 211 Antisense
TCAAAACCAACAGCAACCGCAGCAG 621 627 294 Antisense
ACCAAAACGATCCCACCAATCAGGG 41 85 362 Antisense
TAATAATCAACAGCAACTCCAAAAC 73 635 423 Antisense
AAATCAAGGATTCCCTGTGTCCAAT 427 117 537 Antisense
TGTGTCCAATGCATTCCCGACTAAT 693 555 552 Antisense
Sequence Source Affymetrix Proprietary Database