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[176362_s_at]

Description T23E7.2A /REP_DB=WormBase Gene ID /WP=CE14064 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 04      4grp_high_8_8 > 44      6grp_highest_nonorm > 31      6grp_total > 15      4grp_total > 51      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1215
1 2 3 4 range
A 764.1
(0.3)
P 		1311.3
(3)
P 		928
(1.1)
P 		96.6
(-3)
A 		1215
B 696.9
(0.2)
P 		1179.4
(3)
P 		887.6
(1.3)
P 		152
(-3)
P 		1027
C 646.8
(-0.4)
P 		1282.5
(3)
P 		1051.2
(1.8)
P 		154.8
(-3)
P 		1128
avr 702.6
(0) 		1257.7
(3) 		955.6
(1.4) 		134.5
(-3) 		1123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 888
1 2 3 4 5 6 range
A 1006.3
(0)
P 		1414.5
(3)
P 		586.8
(-3)
P 		889.5
(-0.8)
P 		795.8
(-1.5)
P 		1032.4
(0.2)
P 		828
B 1109.8
(2.8)
P 		1130.6
(3)
P 		918.5
(0.8)
P 		801.6
(-0.5)
P 		782.5
(-0.7)
P 		562.7
(-3)
P 		568
C 1450.7
(3)
P 		989.7
(-0.2)
P 		1391.3
(2.6)
P 		613.2
(-2.8)
P 		1042.6
(0.2)
P 		583.6
(-3)
P 		867
avr 1188.9
(3) 		1178.3
(2.9) 		965.5
(0.1) 		768.1
(-2.5) 		873.6
(-1.1) 		726.2
(-3) 		463
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 355
1 2 3 4 range
A 278.2
(2.9)
P 		284.6
(3)
P 		242.6
(2.1)
P 		14.1
(-3)
A 		271
B 222.2
(1.4)
P 		291.3
(3)
P 		205.7
(1)
P 		32.4
(-3)
P 		259
C 214.1
(0.3)
P 		368.7
(3)
P 		366.4
(3)
P 		26.1
(-3)
P 		343
avr 238.2
(1.4) 		314.9
(3) 		271.6
(2.1) 		24.2
(-3) 		291

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 414
1 2 3 4 5 6 range
A 185.5
(-2.1)
P 		503.1
(3)
P 		127.8
(-3)
P 		225.6
(-1.4)
P 		240.1
(-1.2)
P 		251.4
(-1)
P 		375
B 386.1
(3)
P 		376.3
(2.7)
P 		223
(-2.6)
P 		212.3
(-2.9)
P 		317.9
(0.7)
P 		209.8
(-3)
P 		176
C 537.7
(3)
P 		302
(-0.4)
P 		354.1
(0.3)
P 		123.3
(-3)
P 		337.4
(0.1)
P 		195.4
(-2)
P 		414
avr 369.8
(2.3) 		393.8
(3) 		235
(-1.6) 		187.1
(-3) 		298.5
(0.2) 		218.9
(-2.1) 		207
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176362_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17704
Sequence Type Exemplar sequence
Representative Public ID T23E7.2A NCBI
Target Description T23E7.2A /REP_DB=WormBase Gene ID /WP=CE14064 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078453(11), NM_171823(11), NM_078451(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078453 NCBI Caenorhabditis elegans T23E7.2b (T23E7.2) mRNA, complete cds. 11/11 None
NM_171823 NCBI Caenorhabditis elegans T23E7.2e (T23E7.2) mRNA, complete cds. 11/11 None
NM_078451 NCBI Caenorhabditis elegans T23E7.2a (T23E7.2) mRNA, complete cds. 11/11 None
GENEFINDER00000038224 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17670951:17679307:1 11/11 None
T23E7.2b ENSEMBL cdna:known chromosome:CEL140:X:17670938:17680690:1 gene:T23E7.2 11/11 A 
T23E7.2e ENSEMBL cdna:known chromosome:CEL140:X:17670951:17680686:1 gene:T23E7.2 11/11 A 
T23E7.2a ENSEMBL cdna:known chromosome:CEL140:X:17670951:17680305:1 gene:T23E7.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038217 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181789 5 3 NM_078451 176362_s_at (11)
NM_078452 184881_s_at (11)
NM_078453 173056_at (11), 176362_s_at (11)
NM_078454 173056_at (11), 184427_s_at (11)
NM_171823 173056_at (11), 176362_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17670949-17680304(+) 98.46 100.0
Public Domain and Genome References
Ensembl T23E7.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71257 Hypothetical protein T23E7.2a [Caenorhabditis elegans] ref|NP_510852.1| T23E7.2a [Caenorhabditis elegans] 1.0E-180
blast AAB71258 Hypothetical protein T23E7.2b [Caenorhabditis elegans] ref|NP_510854.1| T23E7.2b [Caenorhabditis elegans] 1.0E-180
blast AAM69068 Hypothetical protein T23E7.2e [Caenorhabditis elegans] ref|NP_741957.1| T23E7.2e [Caenorhabditis elegans] 1.0E-167
Sequence
Target Sequence 
>C. ELEGANS:176362_S_AT
ccttcctcgactactcgagtgccaagcaaggagaactctcccgtgccaactcccgcactt
ctatctacggagattccctctcgagaagctgttctcgcgccaatgtcgatgcctacttgg
gcggtggacgtctttcccgtgtggacagctacgttcgtgatatccatactccatacgagt
acgaggttccatcaacctacgatagataccgctcatcttcccgtggaccatcatactcca
ctattaacggatacacggcctatatctcatctccatcttacgtggaaaccgagtcgacgc
gcagaatgaaaagataccagagagacacaagcccggcaatggtccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTTCCTCGACTACTCGAGTGCCAA 385 269 2270 Antisense
CTCCCGCACTTCTATCTACGGAGAT 53 235 2319 Antisense
GAGATTCCCTCTCGAGAAGCTGTTC 606 397 2339 Antisense
GTCGATGCCTACTTGGGCGGTGGAC 109 473 2374 Antisense
CCCGTGTGGACAGCTACGTTCGTGA 387 199 2405 Antisense
CGTTCGTGATATCCATACTCCATAC 601 247 2421 Antisense
TACGATAGATACCGCTCATCTTCCC 242 649 2467 Antisense
GACCATCATACTCCACTATTAACGG 308 383 2495 Antisense
ACGGATACACGGCCTATATCTCATC 470 95 2516 Antisense
GAAACCGAGTCGACGCGCAGAATGA 122 359 2554 Antisense
GAGACACAAGCCCGGCAATGGTCCG 222 393 2591 Antisense
Sequence Source Affymetrix Proprietary Database