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[176359_at]

Description Y119D3A.C /REP_DB=WormBase Gene ID /WP=CE23400 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 50      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 2.4
(-3)
A 		3.3
(-2.1)
A 		3.6
(-1.8)
A 		8.6
(3)
A 		6
B 9.8
(3)
A 		3.5
(-3)
A 		5.2
(-1.4)
A 		8
(1.3)
A 		6
C 4.1
(-2.3)
A 		25.2
(3)
A 		1.5
(-3)
A 		15.4
(0.5)
A 		24
avr 5.4
(-1.4) 		10.7
(3) 		3.4
(-3) 		10.7
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 1.3
(-3)
A 		19.4
(3)
A 		2.9
(-2.4)
A 		2.8
(-2.5)
A 		1.2
(-3)
A 		2.8
(-2.5)
A 		18
B 14.7
(3)
A 		3.2
(-1.9)
A 		14.5
(2.9)
A 		4.6
(-1.3)
A 		2.6
(-2.1)
A 		0.6
(-3)
A 		14
C 1.8
(-3)
A 		2.1
(-2.9)
A 		3.6
(-2.6)
A 		26.7
(3)
A 		3.3
(-2.6)
A 		3.1
(-2.7)
A 		25
avr 5.9
(-0.6) 		8.2
(0.9) 		7
(0.1) 		11.4
(3) 		2.4
(-2.9) 		2.2
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.9
(-1)
A 		0.7
(-3)
A 		0.9
(-1)
A 		1.3
(3)
A 		1
B 3.1
(3)
A 		0.9
(-3)
A 		1.2
(-2.2)
A 		1.7
(-0.8)
A 		2
C 1.3
(-2.3)
A 		7.2
(3)
A 		0.5
(-3)
A 		2.6
(-1.1)
A 		7
avr 1.8
(-0.3) 		2.9
(3) 		0.9
(-3) 		1.9
(-0) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.2
(-3)
A 		6.9
(3)
A 		0.6
(-2.6)
A 		0.7
(-2.6)
A 		0.4
(-2.8)
A 		0.7
(-2.6)
A 		7
B 5.1
(3)
A 		1.1
(-1.9)
A 		3.5
(1)
A 		1.2
(-1.8)
A 		1.1
(-1.9)
A 		0.2
(-3)
A 		5
C 0.7
(-2.9)
A 		0.6
(-3)
A 		0.9
(-2.6)
A 		5.4
(3)
A 		1.1
(-2.4)
A 		1
(-2.5)
A 		5
avr 2
(0.7) 		2.9
(3) 		1.7
(-0.1) 		2.4
(1.7) 		0.9
(-2.2) 		0.6
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176359_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19079
Sequence Type Exemplar sequence
Representative Public ID Y119D3A.C NCBI
Target Description Y119D3A.C /REP_DB=WormBase Gene ID /WP=CE23400 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064975(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064975 NCBI Caenorhabditis elegans Y119D3A.2 (Y119D3A.2) mRNA, complete cds. 11/11 None
GENEFINDER00000014149 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1297798:1299474:1 11/11 None
Y119D3A.2 ENSEMBL cdna:known chromosome:CEL140:III:1297894:1299474:1 gene:Y119D3A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014146 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1297893-1299474(+) 99.43 100.0
Public Domain and Genome References
Gene Title
Ensembl Y119D3A.2
Entrez Gene 191033 Entrez gene
SwissProt Q966E3 EMBL-EBI
WormBase CE23400 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68405 Hypothetical protein Y119D3A.2 [Caenorhabditis elegans] ref|NP_497376.1| Y119D3A.2 [Caenorhabditis elegans] 1.0E-163
blast AAK66039 Hypothetical protein Y82E9BL.17 [Caenorhabditis elegans] 1.0E-100
blast NP_497387 Y82E9BL.17 [Caenorhabditis elegans] 2.0E-95
blast AAK66039 Hypothetical protein Y82E9BL.17 [Caenorhabditis elegans] 3.0E-88
blast AAK66034 Hypothetical protein Y82E9BL.7 [Caenorhabditis elegans] 5.0E-85
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 4.4E-33
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 7.0E-9
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 4.4E-33
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 9.2E-11
Sequence
Target Sequence 
>C. ELEGANS:176359_AT
ctgctgatcccaaatgctacaccagaatgcattcgaaacttcttctgaaaacttggaaat
ggcaaaaatggaatcacgtcaagaaactagacttttcgatagtacaccttgattttatac
ttgatatacttccacacttcaattctaaagggctggaaagtataacaatgcggagtattc
acttagatcatcaatttgaacaaatcacaaaattggatcaatggaaaaacactaaaatct
tacatttgaaaaatgaagcgatgaagttgtgtcctccctttaaatacctatttcaattca
ctgagtttgatgtcaacgcattttatttttcaattcaaaatgctgttcaattcagagatg
atctactaagaagaaaaacattcgaaaagtgcgcagtccgttttactagtttagatgcac
gtgattatagcattcaatatgcgattgtattcaagccggactatcattacgaagatgagt
acgaatattcaaacgatatgggcaaacttgcattcagctctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGCTGATCCCAAATGCTACACCAG 634 237 335 Antisense
GAATGCATTCGAAACTTCTTCTGAA 38 331 359 Antisense
GACTTTTCGATAGTACACCTTGATT 591 371 424 Antisense
TATACTTGATATACTTCCACACTTC 351 661 450 Antisense
TGCGGAGTATTCACTTAGATCATCA 427 583 503 Antisense
TGAAGCGATGAAGTTGTGTCCTCCC 251 575 588 Antisense
TGTGTCCTCCCTTTAAATACCTATT 36 555 602 Antisense
AAAGTGCGCAGTCCGTTTTACTAGT 691 121 720 Antisense
ATATGCGATTGTATTCAAGCCGGAC 211 19 771 Antisense
TCAAGCCGGACTATCATTACGAAGA 438 629 785 Antisense
TGGGCAAACTTGCATTCAGCTCTCC 676 553 833 Antisense
Sequence Source Affymetrix Proprietary Database