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[176358_at]

Description M02H5.12 /REP_DB=WormBase Gene ID /WP=CE25950 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 01      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 32.9
(-2.4)
A 		18.5
(-3)
A 		52.8
(-1.7)
A 		172.6
(3)
P 		154
B 47.8
(-1)
A 		41.8
(-1.5)
A 		24.5
(-3)
A 		93.4
(3)
P 		69
C 50
(-0.9)
A 		6.5
(-3)
A 		40.5
(-1.3)
A 		127.9
(3)
P 		121
avr 43.6
(-1.8) 		22.3
(-3) 		39.3
(-2.1) 		131.3
(3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 56.9
(3)
A 		41.9
(-0.9)
A 		55.6
(2.7)
P 		43.8
(-0.4)
A 		37.4
(-2.1)
A 		33.8
(-3)
A 		23
B 17.7
(-3)
A 		21.8
(-1.3)
A 		32.1
(3)
A 		20.4
(-1.9)
A 		27.4
(1)
M 		23.3
(-0.7)
A 		14
C 17.3
(-2.7)
A 		56.8
(0.6)
P 		14.5
(-2.9)
A 		85.8
(3)
A 		13.9
(-3)
A 		31
(-1.6)
A 		72
avr 30.6
(-1.9) 		40.2
(0.5) 		34.1
(-1) 		50
(3) 		26.2
(-3) 		29.4
(-2.2) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 12
(-0.7)
A 		4
(-3)
A 		13.8
(-0.2)
A 		25.3
(3)
P 		21
B 15.2
(1)
A 		10.3
(-1.1)
A 		5.7
(-3)
A 		19.9
(3)
P 		14
C 16.6
(1.5)
A 		1.9
(-3)
A 		14.1
(0.7)
A 		21.6
(3)
P 		20
avr 14.6
(0.3) 		5.4
(-3) 		11.2
(-0.9) 		22.3
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 10.5
(-0.9)
A 		14.9
(3)
A 		12.1
(0.5)
P 		11.1
(-0.4)
A 		11.3
(-0.2)
A 		8.2
(-3)
A 		7
B 6.1
(-2.3)
A 		7.3
(-1)
A 		7.8
(-0.5)
A 		5.4
(-3)
A 		11.1
(3)
M 		8.7
(0.5)
A 		6
C 6.4
(-1.8)
A 		17.3
(3)
P 		3.7
(-3)
A 		17.3
(3)
A 		4.5
(-2.6)
A 		10.4
(-0)
A 		14
avr 7.7
(-3) 		13.2
(3) 		7.9
(-2.8) 		11.3
(0.9) 		9
(-1.6) 		9.1
(-1.5) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176358_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15485
Sequence Type Exemplar sequence
Representative Public ID M02H5.12 NCBI
Target Description M02H5.12 /REP_DB=WormBase Gene ID /WP=CE25950 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070811(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070811 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-57) (srbc-57) mRNA, complete cds. 11/11 None
M02H5.12 ENSEMBL cdna:known chromosome:CEL140:V:467396:468389:-1 gene:M02H5.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:467395-468389(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srbc-57
Ensembl M02H5.12
Entrez Gene 187413 Entrez gene
SwissProt Q966H6 EMBL-EBI
WormBase CE38091 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503212 Serpentine Receptor, class BC (class B-like) family member (srbc-57) [Caenorhabditis elegans] gb|AAK84551.2| Hypothetical protein M02H5.12 [Caenorhabditis elegans] 1.0E-128
blast CAB07629 Hypothetical protein F54B8.9 [Caenorhabditis elegans] ref|NP_506954.1| Serpentine Receptor, class BC (class B-like) family member (srbc-51) [Caenorhabditis elegans] 2.0E-59
blast CAB07630 Hypothetical protein F54B8.10 [Caenorhabditis elegans] ref|NP_506955.1| Serpentine Receptor, class BC (class B-like) family member (srbc-52) [Caenorhabditis elegans] 6.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 4.5E-92
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503212.2 6 10-32,53-75,80-102,123-145,180-202,215-237
M02H5.12 6 10-32,53-75,80-102,123-145,180-202,215-237
Sequence
Target Sequence 
>C. ELEGANS:176358_AT
atcttttacctgatatggctctcattagttatgggtactattaaaactacaattgttttc
ttcattaccatagaccgagtttttgcattcttttctccgattttctaccacaaacatcgg
aacaaaatctcaatgtatttggttttatttttcatatcattatttgtattttttgaccaa
ttcatgctattcggctactgtgggaacgtaattgacgttccagtgaactgcgagaatttc
cagtgtacggtaaatcaatgttacctacaatattggatggttcatgagcaagtggtattt
tttgtaattagcagtttatccactattttgttcgttcgactttttgtctgcaattttttg
gtgttcaatcaaagtagcaagttgatttcaaaagccacccaaatcgcacttcttgactgc
attattatcatcattttcaattttctaccggtacttgtattggcgtattttccatcaatt
aatttgaaaactggaataactgcgatcccgagaaccggtggatctttgtttgaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTTTTACCTGATATGGCTCTCAT 475 31 271 Antisense
TGTTTTCTTCATTACCATAGACCGA 276 561 324 Antisense
GAGTTTTTGCATTCTTTTCTCCGAT 310 399 347 Antisense
GACCAATTCATGCTATTCGGCTACT 77 385 445 Antisense
GTTTATCCACTATTTTGTTCGTTCG 296 449 584 Antisense
GTTCGTTCGACTTTTTGTCTGCAAT 36 443 600 Antisense
CACCCAAATCGCACTTCTTGACTGC 92 201 666 Antisense
GACTGCATTATTATCATCATTTTCA 356 375 685 Antisense
TTCTACCGGTACTTGTATTGGCGTA 1 687 713 Antisense
ATAACTGCGATCCCGAGAACCGGTG 20 25 766 Antisense
GAACCGGTGGATCTTTGTTTGAATC 90 333 782 Antisense
Sequence Source Affymetrix Proprietary Database