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[176357_at]

Description Y119D3A.B /REP_DB=WormBase Gene ID /WP=CE23399 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 23      4grp_total > 37      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 36.9
(1.4)
M 		43
(2.5)
A 		12.2
(-3)
A 		45.6
(3)
A 		33
B 45
(3)
A 		44.8
(3)
A 		2.9
(-3)
A 		7.9
(-2.3)
A 		42
C 55.5
(3)
A 		35.3
(-1.8)
A 		30.5
(-3)
A 		47.1
(1)
A 		25
avr 45.8
(3) 		41
(2.1) 		15.2
(-3) 		33.5
(0.6) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 47.9
(1.5)
A 		40
(-1.7)
A 		51.5
(3)
A 		41.8
(-1)
A 		36.8
(-3)
A 		41.9
(-0.9)
A 		15
B 27.9
(-1)
A 		43.5
(1.9)
P 		49.7
(3)
A 		39.7
(1.2)
A 		16.9
(-3)
A 		27.6
(-1)
A 		33
C 74.9
(3)
P 		61
(1.9)
A 		51.1
(1.1)
A 		43.3
(0.4)
A 		1
(-3)
A 		9.3
(-2.3)
A 		74
avr 50.2
(2.9) 		48.2
(2.5) 		50.8
(3) 		41.6
(1.3) 		18.2
(-3) 		26.3
(-1.5) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 13.4
(3)
M 		9.3
(0.6)
A 		3.2
(-3)
A 		6.7
(-0.9)
A 		10
B 14.3
(3)
A 		11.1
(1.6)
A 		0.7
(-3)
A 		1.7
(-2.6)
A 		14
C 18.4
(3)
A 		10.1
(-1.7)
A 		10.6
(-1.5)
A 		7.9
(-3)
A 		11
avr 15.4
(3) 		10.2
(0.1) 		4.8
(-3) 		5.4
(-2.7) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 8.8
(-3)
A 		14.2
(3)
A 		11.2
(-0.3)
A 		10.6
(-1)
A 		11.1
(-0.4)
A 		10.2
(-1.4)
A 		5
B 9.7
(-0.7)
A 		14.5
(3)
P 		12.1
(1.1)
A 		10.5
(-0.1)
A 		6.8
(-3)
A 		10.3
(-0.3)
A 		8
C 27.8
(3)
P 		18.6
(1)
A 		13
(-0.2)
A 		8.7
(-1.2)
A 		0.3
(-3)
A 		3.1
(-2.4)
A 		28
avr 15.4
(2.8) 		15.8
(3) 		12.1
(0.7) 		9.9
(-0.6) 		6.1
(-3) 		7.9
(-1.9) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176357_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19020
Sequence Type Exemplar sequence
Representative Public ID Y119D3A.B NCBI
Target Description Y119D3A.B /REP_DB=WormBase Gene ID /WP=CE23399 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064974(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064974 NCBI Caenorhabditis elegans Y119D3A.3 (Y119D3A.3) mRNA, complete cds. 11/11 None
SNAP00000014145 ENSEMBL cdna:SNAP chromosome:CEL140:III:1295674:1297059:1 11/11 None
GENEFINDER00000014148 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1295674:1297059:1 11/11 None
Y119D3A.3 ENSEMBL cdna:known chromosome:CEL140:III:1295674:1297059:1 gene:Y119D3A.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031985 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1295673-1297059(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y119D3A.3
Entrez Gene 191034 Entrez gene
SwissProt Q966E4 EMBL-EBI
WormBase CE23399 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68406 Hypothetical protein Y119D3A.3 [Caenorhabditis elegans] ref|NP_497375.1| Y119D3A.3 [Caenorhabditis elegans] 1.0E-167
blast AAK68407 Hypothetical protein Y119D3A.4 [Caenorhabditis elegans] ref|NP_497373.1| Y119D3A.4 [Caenorhabditis elegans] 4.0E-98
blast CAB03497 Hypothetical protein ZC47.9 [Caenorhabditis elegans] ref|NP_497368.1| ZC47.9 [Caenorhabditis elegans] 6.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.7E-51
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.4E-12
Sequence
Target Sequence 
>C. ELEGANS:176357_AT
aagcatgcttcttgtctaatgattcaaaccattttggaaggaaaagatagagaatatgtt
gtccactctctagtagacgtcttaaaagaggaagagaatatccacatgaaaactatacgt
ctgcatcatgacttatcaattgacgatatgttattaatccttccattattcaatagtcaa
acattgagaagcattgaattaggaggaatgttttcagatcacgagtttaaaagaataact
catttggatcaatggaaaaaggcaaagcacttcaatttttgggattcctggtttaaattt
caaccaatcgaacatttcttgcattttgaggagtttacttttgatactcaagattttcca
atacaaaatgtgattaaaattcgagatgatctgctgcaaagatgtactttccagaaatgc
acaattacgtttctaaaaataaatttcacgcctctcgagtttgcaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCATGCTTCTTGTCTAATGATTC 86 151 346 Antisense
AGAATATGTTGTCCACTCTCTAGTA 657 75 396 Antisense
GTCCACTCTCTAGTAGACGTCTTAA 647 477 406 Antisense
ATCCACATGAAAACTATACGTCTGC 148 39 445 Antisense
ATACGTCTGCATCATGACTTATCAA 274 23 460 Antisense
GATATGTTATTAATCCTTCCATTAT 574 425 490 Antisense
GGAATGTTTTCAGATCACGAGTTTA 402 531 550 Antisense
AGCACTTCAATTTTTGGGATTCCTG 37 73 611 Antisense
AAATTTCAACCAATCGAACATTTCT 103 115 640 Antisense
GATGTACTTTCCAGAAATGCACAAT 138 409 746 Antisense
TTTCACGCCTCTCGAGTTTGCAAGA 329 673 789 Antisense
Sequence Source Affymetrix Proprietary Database