[Home] | [Total List]

[176355_at]

Description Y22D7AL.E /REP_DB=WormBase Gene ID /WP=CE23437 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 53      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 15.2
(-2.7)
A 		12
(-3)
A 		20.9
(-2.1)
A 		71.7
(3)
A 		60
B 9.9
(-3)
A 		53.4
(3)
A 		25.2
(-0.9)
A 		19.3
(-1.7)
A 		44
C 14.8
(-2.3)
A 		19.7
(0.2)
A 		13.3
(-3)
A 		25.3
(3)
A 		12
avr 13.3
(-3) 		28.4
(0.6) 		19.8
(-1.5) 		38.8
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 17.9
(-2.1)
A 		8.3
(-3)
A 		76.5
(3)
A 		7.8
(-3)
A 		13
(-2.5)
A 		9.1
(-2.9)
A 		69
B 12.8
(-1.6)
A 		14.9
(-0.9)
A 		26.5
(3)
A 		8.6
(-3)
A 		12.4
(-1.7)
A 		9.2
(-2.8)
A 		18
C 13.5
(1.2)
A 		13.5
(1.2)
A 		7.3
(-2.7)
A 		8.6
(-1.9)
A 		6.9
(-3)
A 		16.3
(3)
A 		9
avr 14.7
(-1.7) 		12.2
(-2.2) 		36.8
(3) 		8.3
(-3) 		10.8
(-2.5) 		11.5
(-2.3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 5.5
(-0.8)
A 		2.6
(-3)
A 		5.5
(-0.8)
A 		10.5
(3)
A 		8
B 3.1
(-3)
A 		13.2
(3)
A 		5.8
(-1.4)
A 		4.1
(-2.4)
A 		10
C 4.9
(-0.4)
A 		5.7
(3)
A 		4.6
(-1.7)
A 		4.3
(-3)
A 		1
avr 4.5
(-3) 		7.2
(3) 		5.3
(-1.2) 		6.3
(1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 3.3
(-2.5)
A 		2.9
(-2.6)
A 		16.7
(3)
A 		2
(-3)
A 		3.9
(-2.2)
A 		2.2
(-2.9)
A 		15
B 4.5
(0.2)
A 		5
(1)
A 		6.4
(3)
A 		2.3
(-3)
A 		5
(1)
A 		3.4
(-1.4)
A 		4
C 5
(2.2)
A 		4.1
(0.8)
A 		1.8
(-2.8)
A 		1.7
(-3)
A 		2.2
(-2.2)
A 		5.5
(3)
A 		4
avr 4.3
(-0.8) 		4
(-1.1) 		8.3
(3) 		2
(-3) 		3.7
(-1.4) 		3.7
(-1.4) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176355_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19050
Sequence Type Exemplar sequence
Representative Public ID Y22D7AL.E NCBI
Target Description Y22D7AL.E /REP_DB=WormBase Gene ID /WP=CE23437 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065034(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065034 NCBI Caenorhabditis elegans Y22D7AL.13 (Y22D7AL.13) mRNA, complete cds. 11/11 None
SNAP00000002271 ENSEMBL cdna:SNAP chromosome:CEL140:III:1647647:1648795:-1 11/11 None
Y22D7AL.13 ENSEMBL cdna:known chromosome:CEL140:III:1648610:1648795:-1 gene:Y22D7AL.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1648609-1648795(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y22D7AL.13
Entrez Gene 189506 Entrez gene
SwissProt Q965P4 EMBL-EBI
WormBase CE23437 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84587 Hypothetical protein Y22D7AL.13 [Caenorhabditis elegans] ref|NP_497435.1| Y22D7AL.13 [Caenorhabditis elegans] 3.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497435.1 1 21-43
Y22D7AL.13 1 21-43
SNAP00000002271 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:176355_AT
tgccacgcattggcccgattcaaaactccacctctaggagtccggttaactgctcgaagc
tctacattgctggatacgtcgtgctggtcttcgttatagttgctctcgccattggaatgc
tcatgtacctggacaagcacccact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCACGCATTGGCCCGATTCAAAA 313 587 14 Antisense
CCGATTCAAAACTCCACCTCTAGGA 154 231 28 Antisense
TCCACCTCTAGGAGTCCGGTTAACT 10 1 40 Antisense
AGGAGTCCGGTTAACTGCTCGAAGC 382 55 49 Antisense
ACTGCTCGAAGCTCTACATTGCTGG 12 99 62 Antisense
CATTGCTGGATACGTCGTGCTGGTC 640 215 78 Antisense
ATACGTCGTGCTGGTCTTCGTTATA 635 23 87 Antisense
TGGTCTTCGTTATAGTTGCTCTCGC 138 553 98 Antisense
ATAGTTGCTCTCGCCATTGGAATGC 404 21 109 Antisense
CGCCATTGGAATGCTCATGTACCTG 505 257 120 Antisense
TCATGTACCTGGACAAGCACCCACT 628 621 134 Antisense
Sequence Source Affymetrix Proprietary Database