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[176354_s_at]

Description T06F4.1B /REP_DB=WormBase Gene ID /WP=CE23954 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 09      6grp_total > 03      4grp_total > 39      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 202.5
(3)
P 		96.9
(-3)
A 		97.9
(-2.9)
A 		166.5
(1)
P 		106
B 197.3
(3)
P 		119.9
(-1.8)
P 		100.4
(-3)
A 		114.4
(-2.1)
P 		97
C 215.6
(3)
P 		136.7
(-1.4)
A 		109
(-3)
A 		152.9
(-0.5)
P 		107
avr 205.1
(3) 		117.8
(-2.1) 		102.4
(-3) 		144.6
(-0.5) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 152.4
(2.3)
P 		164.7
(3)
P 		116.2
(0.3)
P 		92.3
(-1)
A 		119.7
(0.5)
A 		55.5
(-3)
A 		109
B 159.6
(3)
P 		136
(1.3)
P 		115
(-0.2)
A 		110.1
(-0.5)
P 		152.8
(2.5)
P 		75.9
(-3)
A 		84
C 155.9
(1.5)
P 		183.8
(3)
P 		113.2
(-0.7)
A 		138.2
(0.6)
P 		106.3
(-1.1)
A 		69.6
(-3)
P 		114
avr 156
(2.7) 		161.5
(3) 		114.8
(0) 		113.5
(-0) 		126.3
(0.8) 		67
(-3) 		95
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 73.7
(3)
P 		21
(-3)
A 		25.6
(-2.5)
A 		24.4
(-2.6)
P 		53
B 62.9
(3)
P 		29.6
(-2)
P 		23.3
(-3)
A 		24.4
(-2.8)
P 		40
C 71.4
(3)
P 		39.3
(-1.2)
A 		38
(-1.4)
A 		25.8
(-3)
P 		46
avr 69.3
(3) 		30
(-2.3) 		29
(-2.4) 		24.9
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 28.1
(-1.1)
P 		58.6
(3)
P 		25.3
(-1.4)
P 		23.4
(-1.7)
A 		36.1
(0)
A 		13.5
(-3)
A 		45
B 55.5
(1.8)
P 		45.3
(0.1)
P 		27.9
(-3)
A 		29.2
(-2.8)
P 		62.1
(3)
P 		28.3
(-2.9)
A 		34
C 57.8
(3)
P 		56.1
(2.7)
P 		28.8
(-2)
A 		27.8
(-2.2)
P 		34.4
(-1.1)
A 		23.3
(-3)
P 		35
avr 47.1
(1.8) 		53.3
(3) 		27.3
(-1.9) 		26.8
(-2) 		44.2
(1.3) 		21.7
(-3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176354_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17201
Sequence Type Exemplar sequence
Representative Public ID T06F4.1B NCBI
Target Description T06F4.1B /REP_DB=WormBase Gene ID /WP=CE23954 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076292(11), NM_076293(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076292 NCBI Caenorhabditis elegans T06F4.1a (T06F4.1) mRNA, complete cds. 11/11 None
NM_076293 NCBI Caenorhabditis elegans T06F4.1b (T06F4.1) mRNA, complete cds. 11/11 None
GENEFINDER00000004067 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4057539:4061256:-1 10/11 None
T06F4.1a ENSEMBL cdna:known chromosome:CEL140:X:4056817:4071467:-1 gene:T06F4.1 11/11 None
T06F4.1b ENSEMBL cdna:known chromosome:CEL140:X:4057539:4061268:-1 gene:T06F4.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004063 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4057539-4061269(-) 100.0 100.0
Public Domain and Genome References
Ensembl T06F4.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508694 T06F4.1b [Caenorhabditis elegans] gb|AAK71399.1| Hypothetical protein T06F4.1b [Caenorhabditis elegans] 3.0E-95
blast CAE68516 Hypothetical protein CBG14330 [Caenorhabditis briggsae] 4.0E-92
blast NP_508693 T06F4.1a [Caenorhabditis elegans] gb|AAK71398.1| Hypothetical protein T06F4.1a [Caenorhabditis elegans] 2.0E-91
blast NP_508694 T06F4.1b [Caenorhabditis elegans] gb|AAK71399.1| Hypothetical protein T06F4.1b [Caenorhabditis elegans] 1.0E-86
blast CAE68516 Hypothetical protein CBG14330 [Caenorhabditis briggsae] 6.0E-84
blast NP_508694 T06F4.1b [Caenorhabditis elegans] gb|AAK71399.1| Hypothetical protein T06F4.1b [Caenorhabditis elegans] 9.0E-82
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508693.1 1 42-64
NP_508694.1 1 49-71
T06F4.1a 1 42-64
T06F4.1b 1 49-71
GENEFINDER00000004067 2 60-82,92-109
Sequence
Target Sequence 
>C. ELEGANS:176354_S_AT
agttcatccgaatggctgacgatcttcatgatgtggcatcataccttaatgatatgcgca
tttgttttattgccttaacagtcacaggttacattgttctcgtcatatatttgtttgtat
tttgttttcgaagaagtcggcgaaatcaaccgcggcgtcgctatggagattaccagcttg
aaagtcaacgagaattcaataatacacaaacaacaaatgatgaaatgctgacgacggtgc
gaagtgatgcaaatagcagttatatgggtagaaatcatcacaggtcgcatcagaatacgg
cgccaacgttcatgcgccacgggcacatgaaccatcagcagacgacgcgactcgtggcgg
acaacgacggatcggcggtgaaacaccaaataccacacattacaacggaggcgccaactg
acga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTCATCCGAATGGCTGACGATCT 23 65 98 Antisense
GTCACAGGTTACATTGTTCTCGTCA 5 465 178 Antisense
GAAGTCGGCGAAATCAACCGCGGCG 72 337 230 Antisense
TCAACCGCGGCGTCGCTATGGAGAT 326 631 243 Antisense
GAAATCATCACAGGTCGCATCAGAA 79 363 368 Antisense
TACGGCGCCAACGTTCATGCGCCAC 622 647 393 Antisense
CACGGGCACATGAACCATCAGCAGA 218 199 415 Antisense
CATCAGCAGACGACGCGACTCGTGG 209 211 430 Antisense
GACTCGTGGCGGACAACGACGGATC 482 373 446 Antisense
ACGACGGATCGGCGGTGAAACACCA 479 35 461 Antisense
TTACAACGGAGGCGCCAACTGACGA 173 655 497 Antisense
Sequence Source Affymetrix Proprietary Database