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[176352_at]

Description Y22D7AL.J /REP_DB=WormBase Gene ID /WP=CE26497 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 12      4grp_highest_8_8 > 09      4grp_high_8_8 > 62      6grp_highest_nonorm > 14      6grp_total > 24      4grp_total > 58      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7194
1 2 3 4 range
A 4005.8
(-1.2)
P 		7525.7
(1.9)
P 		8710.3
(3)
P 		1977.8
(-3)
P 		6733
B 4436.6
(-0.7)
P 		6509.6
(1)
P 		8926.7
(3)
P 		1732.4
(-3)
P 		7194
C 3970.1
(-0.8)
P 		7370.8
(2.8)
P 		7568.2
(3)
P 		1822.4
(-3)
P 		5746
avr 4137.5
(-0.9) 		7135.4
(1.8) 		8401.7
(3) 		1844.2
(-3) 		6558

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3148
1 2 3 4 5 6 range
A 4666.5
(3)
P 		4104.2
(1.8)
P 		3982.7
(1.5)
P 		2644.9
(-1.3)
P 		2400.8
(-1.8)
P 		1854.5
(-3)
P 		2812
B 4726
(3)
P 		4483.1
(2.5)
P 		4277.2
(2)
P 		3153
(-0.5)
P 		2466.3
(-2)
P 		2021.3
(-3)
P 		2705
C 5002.9
(3)
P 		4140.3
(1.3)
P 		3589.3
(0.2)
P 		3417.1
(-0.1)
P 		2321.6
(-2.2)
P 		1923.6
(-3)
P 		3079
avr 4798.5
(3) 		4242.5
(1.8) 		3949.7
(1.2) 		3071.7
(-0.6) 		2396.2
(-2) 		1933.1
(-3) 		2865
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2348
1 2 3 4 range
A 1458.5
(0.5)
P 		1633.6
(1.1)
P 		2277
(3)
P 		289.5
(-3)
P 		1988
B 1414.8
(0.7)
P 		1607.7
(1.4)
P 		2068.5
(3)
P 		369.2
(-3)
P 		1699
C 1314.2
(-0.4)
P 		2119.1
(1.7)
P 		2637.7
(3)
P 		307.3
(-3)
P 		2330
avr 1395.8
(0.2) 		1786.8
(1.4) 		2327.7
(3) 		322
(-3) 		2006

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1403
1 2 3 4 5 6 range
A 860.2
(-0.6)
P 		1459.7
(3)
P 		867.3
(-0.5)
P 		670.8
(-1.7)
P 		724.5
(-1.4)
P 		451.5
(-3)
P 		1008
B 1644.4
(3)
P 		1492.2
(2)
P 		1038.6
(-1.1)
P 		835.1
(-2.5)
P 		1002
(-1.3)
P 		753.7
(-3)
P 		891
C 1854.4
(3)
P 		1263.3
(0.1)
P 		913.5
(-1.7)
P 		687.2
(-2.8)
P 		751.2
(-2.5)
P 		643.9
(-3)
P 		1211
avr 1453
(3) 		1405.1
(2.7) 		939.8
(-0.7) 		731
(-2.2) 		825.9
(-1.5) 		616.4
(-3) 		837
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176352_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19037
Sequence Type Exemplar sequence
Representative Public ID Y22D7AL.J NCBI
Target Description Y22D7AL.J /REP_DB=WormBase Gene ID /WP=CE26497 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065027(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065027 NCBI Caenorhabditis elegans Y22D7AL.10 (Y22D7AL.10) mRNA, complete cds. 9/11 B 
Y22D7AL.10.1 ENSEMBL cdna:known chromosome:CEL140:III:1617159:1618924:-1 gene:Y22D7AL.10 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002266 6/11 Cross Hyb Matching Probes None
GENEFINDER00000002280 8/11 Cross Hyb Matching Probes None
Y22D7AL.10.2 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1618691-1619496(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y22D7AL.10
Entrez Gene 175315 Entrez gene
SwissProt Q965Q1 EMBL-EBI
WormBase CE27242 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1629790_AT dm
DROSGENOME1:148689_AT dm
CHICKEN:GGA.4873.1.S1_A_AT heat shock 10kDa protein 1 (chaperonin 10) gga
HG-U133_PLUS_2:205133_S_AT heat shock 10kDa protein 1 (chaperonin 10) hs
HG-U133A:205133_S_AT heat shock 10kDa protein 1 (chaperonin 10) hs
HG-FOCUS:205133_S_AT heat shock 10kDa protein 1 (chaperonin 10) hs
HG-U133A_2:205133_S_AT heat shock 10kDa protein 1 (chaperonin 10) hs
HUGENEFL:U07550_AT heat shock 10kDa protein 1 (chaperonin 10) hs
U133_X3P:G4504522_3P_A_AT heat shock 10kDa protein 1 (chaperonin 10) hs
HG-U95AV2:39353_AT heat shock 10kDa protein 1 (chaperonin 10) hs
HG-U95E:72985_I_AT heat shock 10kDa protein 1 (chaperonin 10) hs
HG-U95E:72987_F_AT heat shock 10kDa protein 1 (chaperonin 10) hs
MU11KSUBA:U09659_F_AT heat shock protein 1 (chaperonin 10) mm
MU11KSUBB:MSA.18466.0_F_AT heat shock protein 1 (chaperonin 10) mm
MU11KSUBB:MSA.25897.0_S_AT heat shock protein 1 (chaperonin 10) mm
MG-U74AV2:92829_AT heat shock protein 1 (chaperonin 10) mm
MOE430A:1450668_S_AT heat shock protein 1 (chaperonin 10) mm
MOUSE430A_2:1450668_S_AT heat shock protein 1 (chaperonin 10) mm
MOUSE430_2:1450668_S_AT heat shock protein 1 (chaperonin 10) mm
MOE430A:1422579_AT heat shock protein 1 (chaperonin 10) mm
MOUSE430A_2:1422579_AT heat shock protein 1 (chaperonin 10) mm
MOUSE430_2:1422579_AT heat shock protein 1 (chaperonin 10) mm
MU11KSUBB:MSA.17689.0_F_AT Heat shock protein 1 (chaperonin 10), mRNA (cDNA clone MGC:36134 IMAGE:5004427) mm
MU19KSUBC:TC39548_AT Heat shock protein 1 (chaperonin 10), mRNA (cDNA clone MGC:36134 IMAGE:5004427) mm
RN-U34:RC_AI170613_G_AT heat shock 10 kDa protein 1 rn
RG-U34A:RC_AI170613_G_AT heat shock 10 kDa protein 1 rn
RN-U34:RC_AI170613_AT heat shock 10 kDa protein 1 rn
RG-U34A:RC_AI170613_AT heat shock 10 kDa protein 1 rn
RAE230A:1386898_AT heat shock 10 kDa protein 1 rn
RAT230_2:1386898_AT heat shock 10 kDa protein 1 rn
Protein Similarities
Method ID Description E-Value
blast AAK84584 Hypothetical protein Y22D7AL.10 [Caenorhabditis elegans] ref|NP_497428.1| Y22D7AL.10 [Caenorhabditis elegans] 9.0E-54
blast CAE66432 Hypothetical protein CBG11702 [Caenorhabditis briggsae] 1.0E-52
blast AAP06016 similar to GenBank Accession Number AJ238010 heat shock protein 10 in Oryzias latipes [Schistosoma japonicum] 5.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR001476 EMBL-EBI Chaperonin Cpn10 2.1E-42
Sequence
Target Sequence 
>C. ELEGANS:176352_AT
gcattatcgtctgggaagcagccgaaaaatgttcctcaccgctgtccgccgatcgagcaa
tgtcctcaagaccttcaagccactctatgatcgtgtgctcgtcgagagagtcgccgccga
gaccaagacaaagggaggaatcatgctcccggagaagtcacaggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATTATCGTCTGGGAAGCAGCCGA 54 307 30 Antisense
GCAGCCGAAAAATGTTCCTCACCGC 595 287 47 Antisense
AGCCGAAAAATGTTCCTCACCGCTG 578 81 49 Antisense
CGCCGATCGAGCAATGTCCTCAAGA 491 255 76 Antisense
TCGAGCAATGTCCTCAAGACCTTCA 625 601 82 Antisense
TCAAGACCTTCAAGCCACTCTATGA 621 629 95 Antisense
GCCACTCTATGATCGTGTGCTCGTC 315 279 108 Antisense
GTGTGCTCGTCGAGAGAGTCGCCGC 263 487 122 Antisense
TCGCCGCCGAGACCAAGACAAAGGG 674 597 140 Antisense
GAGGAATCATGCTCCCGGAGAAGTC 420 403 164 Antisense
CATGCTCCCGGAGAAGTCACAGGGA 115 211 171 Antisense
Sequence Source Affymetrix Proprietary Database