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[176351_at]

Description Y71G12B.G /REP_DB=WormBase Gene ID /WP=CE22896 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 19      4grp_total > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 62.5
(-1.8)
A 		53.5
(-2.3)
A 		42.8
(-3)
A 		139.8
(3)
A 		97
B 70.8
(-2.8)
A 		70.2
(-3)
A 		78.7
(-0.3)
A 		88.8
(3)
A 		19
C 67
(2.2)
A 		68.2
(3)
A 		61.3
(-1.5)
A 		58.9
(-3)
A 		9
avr 66.8
(-2) 		64
(-2.5) 		60.9
(-3) 		95.8
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 42.9
(-0)
A 		63.4
(3)
A 		48.2
(0.7)
A 		29.4
(-2)
A 		58.1
(2.2)
A 		22.9
(-3)
A 		41
B 87.2
(3)
A 		9.8
(-3)
A 		36.4
(-0.9)
A 		66.6
(1.4)
A 		53.4
(0.4)
A 		43.1
(-0.4)
A 		77
C 52.3
(1)
A 		47.9
(0.4)
A 		65.6
(3)
A 		25.5
(-3)
A 		27.7
(-2.7)
A 		38.6
(-1)
A 		40
avr 60.8
(3) 		40.4
(-1.7) 		50.1
(0.5) 		40.5
(-1.7) 		46.4
(-0.3) 		34.9
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 22.8
(3)
A 		11.6
(-2.8)
A 		11.2
(-3)
A 		20.5
(1.8)
A 		12
B 22.6
(3)
A 		17.3
(-3)
A 		18.2
(-2)
A 		18.9
(-1.2)
A 		5
C 22.2
(3)
A 		19.6
(1.7)
A 		21.4
(2.6)
A 		9.9
(-3)
A 		12
avr 22.5
(3) 		16.2
(-3) 		16.9
(-2.3) 		16.4
(-2.8) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 7.9
(-2.2)
A 		22.5
(3)
A 		10.5
(-1.3)
A 		7.5
(-2.3)
A 		17.5
(1.2)
A 		5.6
(-3)
A 		17
B 30.4
(3)
A 		3.3
(-3)
A 		8.8
(-1.8)
A 		17.6
(0.2)
A 		21.7
(1.1)
A 		16.1
(-0.2)
A 		27
C 19.4
(3)
A 		14.6
(1)
A 		16.7
(1.9)
A 		5.1
(-3)
A 		9
(-1.4)
A 		12.9
(0.3)
A 		14
avr 19.2
(3) 		13.5
(-0.8) 		12
(-1.7) 		10.1
(-3) 		16.1
(1) 		11.5
(-2.1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176351_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18688
Sequence Type Exemplar sequence
Representative Public ID Y71G12B.G NCBI
Target Description Y71G12B.G /REP_DB=WormBase Gene ID /WP=CE22896 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y71G12B.G
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y71G12B.G Y71G12B.G /REP_DB=WormBase Gene ID /WP=CE22896 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058485 11/11 Negative Strand Matching Probes A 
GENEFINDER00000001829 11/11 Negative Strand Matching Probes None
SNAP00000001789 11/11 Negative Strand Matching Probes None
Y71G12B.11a 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1737706-1738033(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:176351_AT
ggaagtctgtcgggatagcggctccctcattgagatcatgctcgaattgcttcatctcaa
agccaatagcatctactgctgcctcgactgctcgtgttccctgttgattcttctcttcga
cagtggccaccgtcttgaggagacgagcaacgttggaaaccataacctttgccgcatctt
tgagatgtcccattgctggatgttgaagggaaagtcccgaggcgttcttggtggcttgaa
tcagagaggtgagcgctgcggcaacgtcacgaaccgcgtggatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGTCTGTCGGGATAGCGGCTCC 528 531 24 Antisense
CGGCTCCCTCATTGAGATCATGCTC 134 243 42 Antisense
GATCATGCTCGAATTGCTTCATCTC 40 421 57 Antisense
AGCCAATAGCATCTACTGCTGCCTC 350 83 84 Antisense
CCTGTTGATTCTTCTCTTCGACAGT 357 265 123 Antisense
CAGTGGCCACCGTCTTGAGGAGACG 520 207 144 Antisense
CCATAACCTTTGCCGCATCTTTGAG 410 269 183 Antisense
GAGATGTCCCATTGCTGGATGTTGA 640 395 205 Antisense
TGAAGGGAAAGTCCCGAGGCGTTCT 369 439 227 Antisense
TCAGAGAGGTGAGCGCTGCGGCAAC 653 623 264 Antisense
GCAACGTCACGAACCGCGTGGATCA 683 319 284 Antisense
Sequence Source Affymetrix Proprietary Database