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[176349_s_at]

Description T24E12.5 /REP_DB=WormBase Gene ID /WP=CE24011 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 24      4grp_high_8_8 > 56      6grp_highest_nonorm > 90      6grp_total > 02      4grp_total > 55      6grp_highest_sub > De      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 172
(3)
P 		72.4
(-2.3)
P 		147
(1.7)
P 		59.6
(-3)
A 		112
B 212.2
(3)
P 		80.8
(-3)
P 		162.7
(0.7)
P 		94.2
(-2.4)
P 		131
C 224.5
(3)
P 		83.3
(-3)
P 		85.5
(-2.9)
P 		109.6
(-1.9)
P 		141
avr 202.9
(3) 		78.8
(-3) 		131.7
(-0.4) 		87.8
(-2.6) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 96
(-2.7)
P 		186
(3)
P 		112.3
(-1.7)
P 		150.2
(0.7)
P 		91.9
(-3)
P 		106.3
(-2.1)
P 		94
B 136
(2.8)
P 		138.2
(3)
P 		110.7
(-0.1)
P 		105.8
(-0.6)
P 		123.8
(1.4)
P 		84.4
(-3)
P 		54
C 186.2
(3)
P 		133.7
(-0.1)
P 		114.1
(-1.3)
P 		105.1
(-1.8)
P 		146.1
(0.6)
P 		84.5
(-3)
P 		102
avr 139.4
(1.7) 		152.6
(3) 		112.4
(-1) 		120.4
(-0.2) 		120.6
(-0.2) 		91.7
(-3) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 62.6
(3)
P 		15.7
(-2.2)
P 		38.4
(0.3)
P 		8.7
(-3)
A 		54
B 67.7
(3)
P 		20
(-3)
P 		37.7
(-0.8)
P 		20.1
(-3)
P 		48
C 74.3
(3)
P 		24
(-2.4)
P 		29.8
(-1.8)
P 		18.5
(-3)
P 		56
avr 68.2
(3) 		19.9
(-2.5) 		35.3
(-0.8) 		15.8
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 17.7
(-3)
P 		66.2
(3)
P 		24.5
(-2.2)
P 		38.1
(-0.5)
P 		27.7
(-1.8)
P 		25.9
(-2)
P 		49
B 47.3
(2.2)
P 		46
(1.9)
P 		26.9
(-3)
P 		28
(-2.7)
P 		50.3
(3)
P 		31.5
(-1.8)
P 		23
C 69
(3)
P 		40.8
(-0.5)
P 		29.1
(-2)
P 		21.1
(-3)
P 		47.3
(0.3)
P 		28.3
(-2.1)
P 		48
avr 44.7
(1.4) 		51
(3) 		26.8
(-3) 		29.1
(-2.4) 		41.8
(0.7) 		28.6
(-2.6) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176349_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4437
Sequence Type Exemplar sequence
Representative Public ID T24E12.5 NCBI
Target Description T24E12.5 /REP_DB=WormBase Gene ID /WP=CE24011 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062240(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062240 NCBI Caenorhabditis elegans T24E12.5 (T24E12.5) mRNA, complete cds. 11/11 None
SNAP00000005566 ENSEMBL cdna:SNAP chromosome:CEL140:II:3753940:3757012:1 11/11 None
GENEFINDER00000005582 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3753915:3757373:1 11/11 None
T24E12.5 ENSEMBL cdna:known chromosome:CEL140:II:3753915:3757350:1 gene:T24E12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3753913-3757099(+) 90.87 100.0
Public Domain and Genome References
Gene Title
Ensembl T24E12.5
Entrez Gene 173720 Entrez gene
SwissProt Q965K6 EMBL-EBI
WormBase CE35625 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15992 proton transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16469 proton-transporting two-sector ATPase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK84577 Hypothetical protein T24E12.5 [Caenorhabditis elegans] ref|NP_494641.2| T24E12.5 [Caenorhabditis elegans] 0.0
blast B88109 protein T24E12.5 [imported] - Caenorhabditis elegans 0.0
blast AAK84577 Hypothetical protein T24E12.5 [Caenorhabditis elegans] ref|NP_494641.2| T24E12.5 [Caenorhabditis elegans] 1.0E-145
blast B88109 protein T24E12.5 [imported] - Caenorhabditis elegans 1.0E-143
blast AAC68731 Hypothetical protein Y47G7B.2 [Caenorhabditis elegans] ref|NP_494339.1| Y47G7B.2 [Caenorhabditis elegans] 7.0E-53
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494641.2 3 12-34,44-66,73-95
T24E12.5 3 12-34,44-66,73-95
SNAP00000005566 3 10-32,39-61,65-87
GENEFINDER00000005582 3 12-34,44-66,73-95
Sequence
Target Sequence 
>C. ELEGANS:176349_S_AT
aagcacgtacttcggaatcaattcgactaaccgccaatgtcgtttccggagaaaaatgga
aaacatttgctgaactcaaggaattactaggaaaccaacttcgtgacgctaaccaatcga
aacaagattcctatccaagaggagaatgtaacaccccagagaaaagaaatgaaaaaaaca
ataatttcgagagacaacaaccacgaaaatcgttgcaagatcagcattggaatgttcctt
ttgaattcgagagagacccgaacaaccaaacaggccgagaaagagaagattcatccactg
accagttttggatgagcgttacaactccaaaaaactttacatacaccatggtaggtcttg
ccaacaatggacgcgaaggtttcctgcattcgttaatcagacacggaagagagttcacgg
gctttccatcgaatcgttttcacagagatattctggatgtagttccaccatccatacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCACGTACTTCGGAATCAATTCG 297 149 1184 Antisense
AATCAATTCGACTAACCGCCAATGT 663 167 1199 Antisense
TAACCGCCAATGTCGTTTCCGGAGA 307 637 1211 Antisense
CAACTTCGTGACGCTAACCAATCGA 143 185 1279 Antisense
GAGAGACCCGAACAACCAAACAGGC 466 389 1434 Antisense
GAAGATTCATCCACTGACCAGTTTT 644 335 1468 Antisense
GTAGGTCTTGCCAACAATGGACGCG 216 457 1534 Antisense
ATGGACGCGAAGGTTTCCTGCATTC 198 53 1550 Antisense
GGTTTCCTGCATTCGTTAATCAGAC 43 507 1561 Antisense
GGAAGAGAGTTCACGGGCTTTCCAT 170 531 1588 Antisense
GGATGTAGTTCCACCATCCATACGC 460 509 1638 Antisense
Sequence Source Affymetrix Proprietary Database