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[176348_at]

Description Y22D7AL.O /REP_DB=WormBase Gene ID /WP=CE26502 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 49      4grp_total > 44      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 44
(3)
A 		31.3
(0.4)
A 		22.8
(-1.4)
A 		14.9
(-3)
A 		29
B 47.6
(-0.1)
A 		85.3
(3)
A 		11.9
(-3)
A 		18.2
(-2.5)
A 		73
C 33.1
(3)
A 		24.2
(-0.4)
A 		17.5
(-3)
A 		22.8
(-1)
A 		16
avr 41.6
(1.9) 		46.9
(3) 		17.4
(-3) 		18.6
(-2.8) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 29.2
(3)
A 		17.8
(-3)
A 		17.8
(-3)
A 		18.8
(-2.5)
A 		19.1
(-2.3)
A 		28.3
(2.5)
A 		11
B 55.8
(3)
A 		16.8
(-3)
A 		22.3
(-2.2)
A 		19.5
(-2.6)
A 		43.6
(1.1)
A 		18.4
(-2.8)
A 		39
C 18.5
(-2.3)
A 		14.7
(-3)
A 		26.3
(-0.7)
A 		24.9
(-1)
A 		29.4
(-0.1)
A 		45.3
(3)
A 		31
avr 34.5
(3) 		16.4
(-3) 		22.1
(-1.1) 		21.1
(-1.4) 		30.7
(1.7) 		30.7
(1.7) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 16
(3)
A 		6.8
(-1)
A 		6
(-1.3)
A 		2.2
(-3)
A 		14
B 15.2
(1.1)
A 		21.1
(3)
A 		2.8
(-3)
A 		3.9
(-2.6)
A 		18
C 10.9
(3)
A 		6.9
(-0.4)
A 		6.1
(-1.1)
A 		3.8
(-3)
A 		7
avr 14
(3) 		11.6
(1.7) 		5
(-2) 		3.3
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 5.4
(0)
A 		6.3
(1.8)
A 		3.9
(-3)
A 		4.8
(-1.2)
A 		5.8
(0.8)
A 		6.9
(3)
A 		3
B 19.4
(3)
A 		5.6
(-2.8)
A 		5.4
(-2.9)
A 		5.2
(-3)
A 		17.7
(2.3)
A 		6.9
(-2.3)
A 		14
C 6.9
(-1.7)
A 		4.5
(-3)
A 		6.7
(-1.8)
A 		5
(-2.7)
A 		9.5
(-0.2)
A 		15.2
(3)
A 		11
avr 10.6
(2.6) 		5.5
(-2.5) 		5.3
(-2.7) 		5
(-3) 		11
(3) 		9.7
(1.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176348_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18995
Sequence Type Exemplar sequence
Representative Public ID Y22D7AL.O NCBI
Target Description Y22D7AL.O /REP_DB=WormBase Gene ID /WP=CE26502 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065023(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065023 NCBI Caenorhabditis elegans Y22D7AL.7 (Y22D7AL.7) mRNA, complete cds. 9/11 A 
GENEFINDER00000002275 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1576746:1580865:1 11/11 None
SNAP00000002263 ENSEMBL cdna:SNAP chromosome:CEL140:III:1576826:1598456:1 9/11 None
Y22D7AL.7 ENSEMBL cdna:known chromosome:CEL140:III:1576746:1580784:1 gene:Y22D7AL.7 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1576745-1580757(+) 95.88 100.0
Public Domain and Genome References
Gene Title
Ensembl Y22D7AL.7
Entrez Gene 175312 Entrez gene
SwissProt Q965Q5 EMBL-EBI
WormBase CE27245 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84596 Hypothetical protein Y22D7AL.7 [Caenorhabditis elegans] ref|NP_497424.1| Y22D7AL.7 [Caenorhabditis elegans] 0.0
blast AAK84596 Hypothetical protein Y22D7AL.7 [Caenorhabditis elegans] ref|NP_497424.1| Y22D7AL.7 [Caenorhabditis elegans] 1.0E-167
blast AAK84596 Hypothetical protein Y22D7AL.7 [Caenorhabditis elegans] ref|NP_497424.1| Y22D7AL.7 [Caenorhabditis elegans] 1.0E-151
blast CAE69182 Hypothetical protein CBG15216 [Caenorhabditis briggsae] 5.0E-81
blast CAE69182 Hypothetical protein CBG15216 [Caenorhabditis briggsae] 7.0E-60
blast CAE69182 Hypothetical protein CBG15216 [Caenorhabditis briggsae] 2.0E-55
Sequence
Target Sequence 
>C. ELEGANS:176348_AT
gttcaatttgcggattgtcgccgaaattgaaatgatcgaaaatcatctgaaattcgatga
aaaacgccgagaaaaacgtccaccaccgcccacgcatcagcaccgcccgtcaaacggcca
cgtttcttccatgacacgtcatcagcgccaccttgccacgtcgataaatgacgtcatcaa
cgggcgccaagtgacgtcatcgatgagctcagagctcgtgagacgggcgatgccacgtca
tccgcccggcggaattgccacgtcgattgtcagcgagcatcgcggatatctgatggatga
taacttgaaaaaaaaaaatcgatatttcgccacgtggattatcgattttctgaaaaatta
taaatcgctagcacgtcaacgcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAATTTGCGGATTGTCGCCGAA 398 445 627 Antisense
CACGTTTCTTCCATGACACGTCATC 657 197 745 Antisense
TTCCATGACACGTCATCAGCGCCAC 479 701 753 Antisense
CCACCTTGCCACGTCGATAAATGAC 321 273 774 Antisense
ATCAACGGGCGCCAAGTGACGTCAT 538 25 802 Antisense
GAGCTCAGAGCTCGTGAGACGGGCG 120 387 831 Antisense
TCGTGAGACGGGCGATGCCACGTCA 405 605 842 Antisense
GTCATCCGCCCGGCGGAATTGCCAC 429 467 863 Antisense
GCCACGTCGATTGTCAGCGAGCATC 671 279 883 Antisense
GATATTTCGCCACGTGGATTATCGA 695 425 947 Antisense
ATAAATCGCTAGCACGTCAACGCAT 48 25 986 Antisense
Sequence Source Affymetrix Proprietary Database