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[176347_at]

Description Y22D7AL.B /REP_DB=WormBase Gene ID /WP=CE23434 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 72      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 46      6grp_total > 73      4grp_total > 02      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12437
1 2 3 4 range
A 2011.9
(-2.5)
P 		934.3
(-3)
P 		1524
(-2.7)
P 		13255.3
(3)
P 		12321
B 2041
(-2.6)
P 		1226.1
(-3)
P 		1515.4
(-2.9)
P 		12841.8
(3)
P 		11616
C 1988.4
(-2.6)
P 		1117.9
(-3)
P 		1349.5
(-2.9)
P 		13371.6
(3)
P 		12254
avr 2013.8
(-2.5) 		1092.8
(-3) 		1463
(-2.8) 		13156.2
(3) 		12063

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1608
1 2 3 4 5 6 range
A 2770.8
(-0.6)
P 		2360.7
(-2.6)
P 		3495.3
(3)
P 		2933.4
(0.2)
P 		3125.5
(1.2)
P 		2283.6
(-3)
P 		1212
B 2562.7
(-3)
P 		3162.3
(-0.1)
P 		3712.5
(2.6)
P 		3795.5
(3)
P 		3244.1
(0.3)
P 		2888.3
(-1.4)
P 		1233
C 2187.1
(-3)
P 		2920.1
(0.4)
P 		2390.3
(-2.1)
P 		3474
(3)
P 		2932.9
(0.5)
P 		3226.6
(1.8)
P 		1287
avr 2506.9
(-3) 		2814.4
(-0.9) 		3199.4
(1.6) 		3401
(3) 		3100.8
(1) 		2799.5
(-1) 		894
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2534
1 2 3 4 range
A 732.5
(-1.2)
P 		202.8
(-3)
P 		398.4
(-2.3)
P 		1940.3
(3)
P 		1738
B 650.9
(-2.1)
P 		302.8
(-3)
P 		351.1
(-2.9)
P 		2736.6
(3)
P 		2434
C 658.2
(-2)
P 		321.4
(-3)
P 		470.4
(-2.5)
P 		2254.7
(3)
P 		1933
avr 680.5
(-1.8) 		275.7
(-3) 		406.6
(-2.6) 		2310.5
(3) 		2035

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 807
1 2 3 4 5 6 range
A 510.8
(-3)
P 		839.6
(1.6)
P 		761.2
(0.5)
P 		744
(0.2)
P 		943.1
(3)
P 		556
(-2.4)
P 		432
B 891.7
(-3)
P 		1052.6
(-0.7)
P 		901.5
(-2.9)
P 		1005.3
(-1.4)
P 		1318
(3)
P 		1077.1
(-0.4)
P 		426
C 810.7
(-0.4)
P 		891
(0.6)
P 		608.4
(-3)
P 		698.6
(-1.9)
P 		949.1
(1.3)
P 		1080.1
(3)
P 		472
avr 737.7
(-3) 		927.7
(0.4) 		757
(-2.7) 		816
(-1.6) 		1070.1
(3) 		904.4
(0) 		332
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176347_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19011
Sequence Type Exemplar sequence
Representative Public ID Y22D7AL.B NCBI
Target Description Y22D7AL.B /REP_DB=WormBase Gene ID /WP=CE23434 /CHR=3 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065037(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065037 NCBI Caenorhabditis elegans Y22D7AL.15 (Y22D7AL.15) mRNA, complete cds. 11/11 None
SNAP00000002274 ENSEMBL cdna:SNAP chromosome:CEL140:III:1656471:1665141:-1 10/11 None
Y22D7AL.15.2 ENSEMBL cdna:known chromosome:CEL140:III:1658200:1659850:-1 gene:Y22D7AL.15 11/11 None
Y22D7AL.15.1 ENSEMBL cdna:known chromosome:CEL140:III:1658200:1659852:-1 gene:Y22D7AL.15 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000002283 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1658264-1659841(-) 83.71 100.0
Public Domain and Genome References
Gene Title
Ensembl Y22D7AL.15
Entrez Gene 189508 Entrez gene
SwissProt Q965P1 EMBL-EBI
WormBase CE30213 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84590 Hypothetical protein Y22D7AL.16 [Caenorhabditis elegans] ref|NP_497439.1| Y22D7AL.16 [Caenorhabditis elegans] 1.0E-121
blast AAK84589 Hypothetical protein Y22D7AL.15 [Caenorhabditis elegans] ref|NP_497438.2| Y22D7AL.15 [Caenorhabditis elegans] 3.0E-78
blast AAK84589 Hypothetical protein Y22D7AL.15 [Caenorhabditis elegans] ref|NP_497438.2| Y22D7AL.15 [Caenorhabditis elegans] 9.0E-59
blast CAE69189 Hypothetical protein CBG15224 [Caenorhabditis briggsae] 1.0E-56
blast CAE69189 Hypothetical protein CBG15224 [Caenorhabditis briggsae] 2.0E-43
blast CAE69188 Hypothetical protein CBG15223 [Caenorhabditis briggsae] 1.0E-29
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497438.2 1 105-127
Y22D7AL.15.2 1 105-127
Y22D7AL.15.1 1 105-127
SNAP00000002274 1 288-310
Sequence
Target Sequence 
>C. ELEGANS:176347_AT
cgggaccccaaatggattcagctccgcccccgtatacggtagtgggcggcgcgccagttg
ccgtggaaatgcagccggtttatgcggcttatccccaacaacaggcttacggccagccga
ctgttgtgcaggctcatgtagtccagcagcctactcaggctactgtaatcattagtgctt
ctgtgaaacacgtggatcaggataaaccatatttggagtactgtccgagatgtcagattt
tttgctggtttttttttgtgggaaatgttggaaatttcaatttctactacttaatcaatt
tgttgatctatagaacccaacgagttttcgtggcgggacccaaaaattcccactggtcaa
aaaaaagcaaagtttctgtaggtttggaaacattcttcccccaacaattgtttaactttt
ccatcaaattccaatattttttgaagacatctgtaacaactcgaactgttcactcaattg
gaacctgctggtggattattttattcattggagttttcgttttctgctggccaattcttt
actgtctttgctgtgccggttcaaaggatgttaagcatttttgcccgaattgtggaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGGACCCCAAATGGATTCAGCTCC 226 1 53 Antisense
GCGCCAGTTGCCGTGGAAATGCAGC 533 287 103 Antisense
AGCCGGTTTATGCGGCTTATCCCCA 371 1 125 Antisense
TTATCCCCAACAACAGGCTTACGGC 676 675 141 Antisense
CTTACGGCCAGCCGACTGTTGTGCA 590 221 158 Antisense
GTGCAGGCTCATGTAGTCCAGCAGC 27 481 178 Antisense
TCCAGCAGCCTACTCAGGCTACTGT 618 589 194 Antisense
TTCATTGGAGTTTTCGTTTTCTGCT 609 689 556 Antisense
GTTTTCTGCTGGCCAATTCTTTACT 227 449 571 Antisense
CAATTCTTTACTGTCTTTGCTGTGC 154 181 584 Antisense
GCATTTTTGCCCGAATTGTGGAACC 655 307 627 Antisense
Sequence Source Affymetrix Proprietary Database